2019-11-07 10:27:51 +00:00
|
|
|
%define packname affyio
|
|
|
|
|
%define Rversion 3.4.0
|
|
|
|
|
|
|
|
|
|
Name: R-%{packname}
|
2021-02-03 18:35:21 +00:00
|
|
|
Version: 1.60.0
|
|
|
|
|
Release: 1%{dist}
|
2019-11-07 10:27:51 +00:00
|
|
|
Summary: Tools for parsing Affymetrix data files
|
|
|
|
|
Summary(fr): Outils d'analyse de fichier de données de puces affymetrix
|
|
|
|
|
License: LGPLv2+
|
|
|
|
|
URL: http://bioconductor.org/packages/release/bioc/html/affyio.html
|
|
|
|
|
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
|
|
|
|
|
Patch0: affyio-fix-DESCRIPTION-Depends.patch
|
|
|
|
|
BuildRequires: R-devel >= %{Rversion} tex(latex) zlib-devel R-methods
|
|
|
|
|
|
|
|
|
|
%description
|
|
|
|
|
Routines for parsing Affymetrix data files based upon file format
|
|
|
|
|
information. Primary focus is on accessing the CEL and CDF file formats.
|
|
|
|
|
|
|
|
|
|
%description -l fr
|
|
|
|
|
Scripts pour analyser les fichiers de données issuent de puces affymetrix
|
|
|
|
|
basé sur les informations fournis pas les extensions. Un des premier
|
|
|
|
|
objectifs est de convertir les données dans des fichiers au format
|
|
|
|
|
CEL ou CDF.
|
|
|
|
|
|
|
|
|
|
%prep
|
|
|
|
|
%setup -q -c -n %{packname}
|
|
|
|
|
sed -i '/Imports: zlibbioc/d' %{packname}/DESCRIPTION
|
|
|
|
|
sed -i '/import(zlibbioc)/d' %{packname}/NAMESPACE
|
|
|
|
|
%patch0 -p1 -b .fixdep
|
|
|
|
|
|
|
|
|
|
%build
|
|
|
|
|
|
|
|
|
|
%install
|
|
|
|
|
rm -rf %{buildroot}
|
|
|
|
|
|
|
|
|
|
mkdir -p %{buildroot}%{_libdir}/R/library
|
|
|
|
|
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
|
|
|
|
|
# Clean up in advance of check
|
|
|
|
|
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
|
|
|
|
|
rm -rf %{buildroot}%{_libdir}/R/library/R.css
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
%check
|
|
|
|
|
%{_bindir}/R CMD check %{packname}
|
|
|
|
|
|
|
|
|
|
%files
|
|
|
|
|
%dir %{_libdir}/R/library/%{packname}
|
|
|
|
|
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
|
|
|
|
|
%doc %{_libdir}/R/library/%{packname}/html
|
|
|
|
|
%{_libdir}/R/library/%{packname}/INDEX
|
|
|
|
|
%{_libdir}/R/library/%{packname}/NAMESPACE
|
|
|
|
|
%{_libdir}/R/library/%{packname}/R/
|
|
|
|
|
%{_libdir}/R/library/%{packname}/Meta
|
|
|
|
|
%{_libdir}/R/library/%{packname}/help
|
|
|
|
|
%{_libdir}/R/library/%{packname}/libs
|
|
|
|
|
|
|
|
|
|
%changelog
|
2021-02-03 18:35:21 +00:00
|
|
|
* Wed Feb 3 2021 Tom Callaway <spot@fedoraproject.org> - 1.60.0-1
|
|
|
|
|
- update to 1.60.0
|
|
|
|
|
|
2021-01-25 22:48:08 +00:00
|
|
|
* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
|
|
|
|
|
|
2020-07-27 10:46:00 +00:00
|
|
|
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.58.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
|
|
|
|
|
|
2020-06-08 14:50:20 +00:00
|
|
|
* Mon Jun 8 2020 Tom Callaway <spot@fedoraproject.org> - 1.58.0-1
|
|
|
|
|
- rebuild for R 4
|
|
|
|
|
- update to 1.58.0
|
|
|
|
|
|
2020-01-28 09:54:12 +00:00
|
|
|
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.56.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
|
|
|
|
|
|
2019-11-07 13:54:14 +00:00
|
|
|
* Thu Nov 7 2019 Tom Callaway <spot@fedoraproject.org> - 1.56.0-1
|
|
|
|
|
- update to 1.56.0
|
|
|
|
|
|
2019-11-07 10:27:51 +00:00
|
|
|
* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.50.0-5
|
|
|
|
|
- Remove explicit dependencies provided by automatic dependency generator
|
|
|
|
|
|
|
|
|
|
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-4
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.50.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 1.50.0-1
|
|
|
|
|
- update to 1.50.0
|
|
|
|
|
|
|
|
|
|
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-4
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.46.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 1.46.0-1
|
|
|
|
|
- update to 1.46.0
|
|
|
|
|
|
|
|
|
|
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-5
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.0-4
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.32.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.32.0-1
|
|
|
|
|
- Update to version 1.32.0
|
|
|
|
|
|
|
|
|
|
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.30.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.30.0-1
|
|
|
|
|
- Update to version 1.30.0
|
|
|
|
|
|
|
|
|
|
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.28.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.28.0-1
|
|
|
|
|
- Update to version 1.28.0
|
|
|
|
|
|
|
|
|
|
* Thu Apr 04 2013 pingou <pingou@pingoured.fr> 1.26.0-1
|
|
|
|
|
- Update to version 1.26.0
|
|
|
|
|
|
|
|
|
|
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-4
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.22.0-1
|
|
|
|
|
- Update to 1.22.0
|
|
|
|
|
|
|
|
|
|
* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.20.0-1
|
|
|
|
|
- Update to version 1.20.0
|
|
|
|
|
|
|
|
|
|
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.0-2
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.18.0-1
|
|
|
|
|
- Update to version 1.18.0
|
|
|
|
|
|
|
|
|
|
* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.16.0-1
|
|
|
|
|
- Update to version 1.16.0
|
|
|
|
|
- Fix url to a more stable form
|
|
|
|
|
- Remove R on post/postun since there is no post/postun
|
|
|
|
|
|
|
|
|
|
* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.14.0-1
|
|
|
|
|
- Update to 1.14.0
|
|
|
|
|
- Remove %%post and %%postun
|
|
|
|
|
- Adapt %%files to R-2.10.0
|
|
|
|
|
|
|
|
|
|
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.0-3
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-2
|
|
|
|
|
- version 1.20.0 != 1.12.0
|
|
|
|
|
|
|
|
|
|
* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-1
|
|
|
|
|
- Update to Bioconductor 2.4 and R 2.9.0
|
|
|
|
|
- Add requires to R-methods
|
|
|
|
|
|
|
|
|
|
* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.1-4
|
|
|
|
|
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
|
|
|
|
|
|
|
|
|
|
* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-2
|
|
|
|
|
- Typo on the release number
|
|
|
|
|
|
|
|
|
|
* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-1
|
|
|
|
|
- Update to newest version
|
|
|
|
|
|
|
|
|
|
* Sun Nov 30 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-3
|
|
|
|
|
- Own the folder libs -- #473618
|
|
|
|
|
|
|
|
|
|
* Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-2
|
|
|
|
|
- Correct the Source0
|
|
|
|
|
|
|
|
|
|
* Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-1
|
|
|
|
|
- Update to version 1.10.0 for R >= 2.8.0
|
|
|
|
|
|
|
|
|
|
* Fri Sep 05 2008 pingou <pingoufc4-at-yahoo.fr> 1.8.1-1
|
|
|
|
|
- Update to version 1.8.1
|
|
|
|
|
|
|
|
|
|
* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.8.0-1
|
|
|
|
|
- Update to bioconductor 2.2
|
|
|
|
|
|
|
|
|
|
* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.6.1-3
|
|
|
|
|
- Autorebuild for GCC 4.3
|
|
|
|
|
|
|
|
|
|
* Sat Feb 09 2008 Pingou <pingoufc4@yahoo.fr> 1.6.1-2
|
|
|
|
|
- Change on the URL
|
|
|
|
|
|
|
|
|
|
* Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.6.1-1
|
|
|
|
|
- Update to bioconductor 2.1
|
|
|
|
|
|
|
|
|
|
* Wed Aug 29 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-2
|
|
|
|
|
- Change in the license tag to fit the guide lines
|
|
|
|
|
|
|
|
|
|
* Mon Jul 02 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-1
|
|
|
|
|
- initial package for Fedora
|
|
|
|
|
|
