R-affyio/R-affyio.spec

%define packname  affyio
%define Rversion  3.0.0

Name:             R-%{packname}
Version:          1.28.0
Release:          1%{dist}
Summary:          Tools for parsing Affymetrix data files
Summary(fr):      Outils d'analyse de fichier de données de puces affymetrix

Group:            Applications/Engineering
License:          LGPLv2+
URL:              http://bioconductor.org/packages/release/bioc/html/affyio.html
Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
Patch0:           R-affyio-1.22.0-no-zlibbioc.patch
BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)

Requires:         R-core >= %{Rversion} R-methods
BuildRequires:    R-devel >= %{Rversion} tex(latex) zlib-devel R-methods

%description
Routines for parsing Affymetrix data files based upon file format 
information. Primary focus is on accessing the CEL and CDF file formats.

%description -l fr
Scripts pour analyser les fichiers de données issuent de puces affymetrix
basé sur les informations fournis pas les extensions. Un des premier 
objectifs est de convertir les données dans des fichiers au format
CEL ou CDF.

%prep
%setup -q -c -n %{packname}
%patch0 -p0 -b .zlibbioc

%build

%install
rm -rf %{buildroot}

mkdir -p %{buildroot}%{_libdir}/R/library 
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css


%check
%{_bindir}/R CMD check %{packname}

%clean
rm -rf %{buildroot}

%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/LICENSE
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/R/
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/libs

%changelog
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.28.0-1
- Update to version 1.28.0

* Thu Apr 04 2013 pingou <pingou@pingoured.fr> 1.26.0-1
- Update to version 1.26.0

* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild

* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild

* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild

* Wed Nov  9 2011 Tom Callaway <spot@fedoraproject.org> 1.22.0-1
- Update to 1.22.0

* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.20.0-1
- Update to version 1.20.0

* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild

* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.18.0-1
- Update to version 1.18.0

* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.16.0-1
- Update to version 1.16.0
- Fix url to a more stable form
- Remove R on post/postun since there is no post/postun

* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.14.0-1
- Update to 1.14.0
- Remove %%post and %%postun
- Adapt %%files to R-2.10.0

* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild

* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-2
- version 1.20.0 != 1.12.0

* Wed Apr 29 2009 pingou <pingou@pingoured.fr> - 1.12.0-1
- Update to Bioconductor 2.4 and R 2.9.0
- Add requires to R-methods

* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild

* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-2
- Typo on the release number

* Thu Jan 22 2009 pingou <pingou-at-pingoured.fr> 1.10.1-1
- Update to newest version

* Sun Nov 30 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-3
- Own the folder libs -- #473618

* Thu Nov 20 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-2
- Correct the Source0

* Mon Oct 27 2008 pingou <pingoufc4-at-yahoo.fr> 1.10.0-1
- Update to version 1.10.0 for R >= 2.8.0

* Fri Sep 05 2008 pingou <pingoufc4-at-yahoo.fr> 1.8.1-1
- Update to version 1.8.1

* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.8.0-1
- Update to bioconductor 2.2

* Tue Feb 19 2008 Fedora Release Engineering <rel-eng@fedoraproject.org> - 1.6.1-3
- Autorebuild for GCC 4.3

* Sat Feb 09 2008 Pingou <pingoufc4@yahoo.fr> 1.6.1-2
- Change on the URL

* Mon Oct 08 2007 Pingou <pingoufc4@yahoo.fr> 1.6.1-1
- Update to bioconductor 2.1 

* Wed Aug 29 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-2
- Change in the license tag to fit the guide lines

* Mon Jul 02 2007 Pingou <pingoufc4@yahoo.fr> 1.4.1-1
- initial package for Fedora