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51e956e545
R-IRanges/R-IRanges.spec
Tom Callaway 51e956e545 2.4.4
2015-12-07 12:53:07 -05:00

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%global packname IRanges
%global Rvers 3.1.0
%global bootstrap 1
Name: R-%{packname}
Version: 2.4.4
Release: 1%{dist}
Summary: Low-level containers for storing sets of integer ranges
Group: Applications/Engineering
License: Artistic 2.0 and Copyright only
# See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html
URL: http://bioconductor.org/packages/release/bioc/html/IRanges.html
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R-core >= %{Rvers} R-methods R-stats R-RUnit R-Matrix R-BiocGenerics >= 0.15.10 R-S4Vectors >= 0.7.19
# We can't require R-GenomicRanges until it has been built (it deps on R-IRanges)
%if %{bootstrap} < 1
Requires: R-GenomicRanges
%endif
BuildRequires: R-devel >= %{Rvers} tex(latex)
BuildRequires: R-methods R-stats R-RUnit R-Matrix R-BiocGenerics >= 0.15.10
BuildRequires: R-S4Vectors-devel >= 0.7.19
# R-GenomicRanges is only needed for check, but it makes a dep loop
%if %{bootstrap} < 1
BuildRequires: R-GenomicRanges
BuildRequires: R-BSgenome.Celegans.UCSC.ce2
BuildRequires: R-XVector
%endif
%description
The IRanges class and its extensions are low-level containers
for storing sets of integer ranges. A typical use of these containers
in biology is for representing a set of chromosome regions.
More specific extensions of the IRanges class will typically
allow the storage of additional information attached to each
chromosome region as well as a hierarchical relationship between
these regions.
%package devel
Summary: Development files for %{name}
Group: Development/Libraries
Requires: %{name} = %{version}-%{release}
%description devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
# x86/x86_64 -> Architecture dependent package
mkdir -p %{buildroot}%{_libdir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css
%check
%if %{bootstrap} < 1
%{_bindir}/R CMD check %{packname}
%endif
%clean
rm -rf %{buildroot}
%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}/
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/CITATION
%{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/extdata
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/libs
%{_libdir}/R/library/%{packname}/unitTests
%files devel
%defattr(-,root,root,-)
%{_libdir}/R/library/%{packname}/include
%changelog
* Mon Dec 7 2015 Tom Callaway <spot@fedoraproject.org> - 2.4.4-1
- update to 2.4.4
* Fri Jul 03 2015 pingou <pingou@pingoured.fr> 2.2.5-1
- Update to version 2.2.5
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 2.2.1-1
- update to 2.2.1
- fix DESCRIPTION to not be doc
- bootstrap pass
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.9-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.22.9-1
- Update to version 1.22.9
* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 1.22.8-1
- update to 1.22.8
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.6-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Mon Feb 3 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-2
- fix XVector to be a conditionalized BR
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.20.6-1
- Update to version 1.20.6
* Fri Jan 24 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-1
- update to 1.20.6
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.18.2-1
- Update to version 1.18.2
* Mon Apr 15 2013 Tom Callaway <spot@fedoraproject.org> - 1.18.0-2
- disable bootstrap
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.18.0-1
- Update to version 1.18.0
* Thu Feb 28 2013 pingou <pingou@pingoured.fr> 1.16.6-1
- Update to version 1.16.6
* Wed Feb 13 2013 pingou <pingou@pingoured.fr> 1.16.5-1
- Update to version 1.16.5
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.4-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.16.4-1
- Update to version 1.16.4
- + BR: R-GenomicRanges
* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-2
- + BR: R-BiocGenerics
* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-1
- Update to version 1.14.4
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.12.1-1
- update to 1.12.1
* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.10.4-1
- Update to version 1.10.4
* Tue Mar 15 2011 pingou <pingou@pingoured.fr> 1.8.9-1
- Update to version 1.8.9
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.8.8-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.8.8-1
- Update to version 1.8.8
* Mon Dec 13 2010 pingou <pingou@pingoured.fr> 1.8.7-1
- Update to version 1.8.7
* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.8.3-1
- Update to version 1.8.3
* Sun Nov 07 2010 pingou <pingou@pingoured.fr> 1.8.2-1
- Update to version 1.8.2
- Change requires from R to R-core
* Thu Oct 14 2010 pingou <pingou@pingoured.fr> 1.6.17-1
- Update to version 1.6.17
* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.6.16-1
- Update to version 1.6.16
* Mon Jul 05 2010 pingou <pingou@pingoured.fr> 1.6.8-2
- Remove Require post and postun
- Change the URL and source0 to a more stable form
- Fix BR to tex(latex)
* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.6.8-1
- Update to version 1.6.8
* Sat Jun 05 2010 pingou <pingou@pingoured.fr> 1.6.5-1
- Update to version 1.6.5
* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.6.1-1
- Update to version 1.6.1
* Sat Mar 27 2010 pingou <pingou@pingoured.fr> 1.4.16-1
- Update to 1.4.16
* Thu Feb 11 2010 pingou <pingou@pingoured.fr> 1.4.11-1
- Update to 1.4.11
* Mon Feb 01 2010 pingou <pingou@pingoured.fr> 1.4.10-1
- Update to 1.4.10
* Thu Dec 17 2009 pingou <pingou@pingoured.fr> 1.4.9-1
- Update to 1.4.9
* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.4.7-1
- Update to 1.4.7
- Remove %%post and %%postun
- Adapt %%files to R-2.10.0
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Fri Jun 12 2009 pingou <pingou@pingoured.fr> 1.2.3-1
- Update to 1.2.3
* Wed Apr 29 2009 pingou <pingou@pingoured.fr> 1.2.0-2
- Update the file section to package doc
- Update the Requires and BR to take into account R version
* Tue Apr 28 2009 pingou <pingou@pingoured.fr> 1.2.0-1
- Update to Bioconductor 2.4 and R-2.9.0
* Wed Apr 01 2009 pingou <pingou@pingoured.fr> 1.1.55-1
- New release from bioconductor 2.4 which includes the change in
the description file for the license used
- Update the license to its correct format
* Sun Mar 22 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-3
- The main package owns the directory
- Remove pkgconfig as R for the devel package
- Define becomes global
* Sat Mar 21 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-2
- Add R-Matrix as R and BR
* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-1
- Update to 1.0.14
* Wed Feb 18 2009 pingou <pingou -AT- pingoured.fr> 1.0.11-1
- initial package for Fedora
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