%global packname IRanges %global Rvers 3.1.0 %global bootstrap 1 Name: R-%{packname} Version: 2.2.1 Release: 2%{dist} Summary: Low-level containers for storing sets of integer ranges Group: Applications/Engineering License: Artistic 2.0 and Copyright only # See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html URL: http://bioconductor.org/packages/release/bioc/html/IRanges.html Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R-core >= %{Rvers} R-methods R-stats R-RUnit R-Matrix R-BiocGenerics >= 0.13.6 R-S4Vectors >= 0.5.23 # We can't require R-GenomicRanges until it has been built (it deps on R-IRanges) %if %{bootstrap} < 1 Requires: R-GenomicRanges %endif BuildRequires: R-devel >= %{Rvers} tex(latex) BuildRequires: R-methods R-stats R-RUnit R-Matrix R-BiocGenerics >= 0.9.1 BuildRequires: R-S4Vectors-devel >= 0.5.23 # R-GenomicRanges is only needed for check, but it makes a dep loop %if %{bootstrap} < 1 BuildRequires: R-GenomicRanges BuildRequires: R-BSgenome.Celegans.UCSC.ce2 BuildRequires: R-XVector %endif %description The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions. %package devel Summary: Development files for %{name} Group: Development/Libraries Requires: %{name} = %{version}-%{release} %description devel The %{name}-devel package contains libraries and header files for developing applications that use %{name}. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} # x86/x86_64 -> Architecture dependent package mkdir -p %{buildroot}%{_libdir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -rf %{buildroot}%{_libdir}/R/library/R.css %check %if %{bootstrap} < 1 %{_bindir}/R CMD check %{packname} %endif %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{_libdir}/R/library/%{packname}/ %doc %{_libdir}/R/library/%{packname}/doc %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/CITATION %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/NEWS %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/extdata %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/libs %{_libdir}/R/library/%{packname}/unitTests %files devel %defattr(-,root,root,-) %{_libdir}/R/library/%{packname}/include %changelog * Tue Jun 16 2015 Fedora Release Engineering - 2.2.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri May 29 2015 Tom Callaway - 2.2.1-1 - update to 2.2.1 - fix DESCRIPTION to not be doc - bootstrap pass * Fri Aug 15 2014 Fedora Release Engineering - 1.22.9-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Wed Jul 02 2014 pingou 1.22.9-1 - Update to version 1.22.9 * Mon Jun 9 2014 Tom Callaway - 1.22.8-1 - update to 1.22.8 * Fri Jun 06 2014 Fedora Release Engineering - 1.20.6-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Feb 3 2014 Tom Callaway - 1.20.6-2 - fix XVector to be a conditionalized BR * Mon Jan 27 2014 pingou 1.20.6-1 - Update to version 1.20.6 * Fri Jan 24 2014 Tom Callaway - 1.20.6-1 - update to 1.20.6 * Fri Aug 02 2013 Fedora Release Engineering - 1.18.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Tue Jul 16 2013 pingou 1.18.2-1 - Update to version 1.18.2 * Mon Apr 15 2013 Tom Callaway - 1.18.0-2 - disable bootstrap * Sun Apr 07 2013 pingou 1.18.0-1 - Update to version 1.18.0 * Thu Feb 28 2013 pingou 1.16.6-1 - Update to version 1.16.6 * Wed Feb 13 2013 pingou 1.16.5-1 - Update to version 1.16.5 * Wed Feb 13 2013 Fedora Release Engineering - 1.16.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 1.16.4-1 - Update to version 1.16.4 - + BR: R-GenomicRanges * Mon Jul 23 2012 pingou 1.14.4-2 - + BR: R-BiocGenerics * Mon Jul 23 2012 pingou 1.14.4-1 - Update to version 1.14.4 * Wed Jul 18 2012 Fedora Release Engineering - 1.12.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 1.12.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway 1.12.1-1 - update to 1.12.1 * Wed Jun 22 2011 pingou 1.10.4-1 - Update to version 1.10.4 * Tue Mar 15 2011 pingou 1.8.9-1 - Update to version 1.8.9 * Mon Feb 07 2011 Fedora Release Engineering - 1.8.8-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Tue Jan 18 2011 pingou 1.8.8-1 - Update to version 1.8.8 * Mon Dec 13 2010 pingou 1.8.7-1 - Update to version 1.8.7 * Thu Nov 25 2010 pingou 1.8.3-1 - Update to version 1.8.3 * Sun Nov 07 2010 pingou 1.8.2-1 - Update to version 1.8.2 - Change requires from R to R-core * Thu Oct 14 2010 pingou 1.6.17-1 - Update to version 1.6.17 * Tue Sep 07 2010 pingou 1.6.16-1 - Update to version 1.6.16 * Mon Jul 05 2010 pingou 1.6.8-2 - Remove Require post and postun - Change the URL and source0 to a more stable form - Fix BR to tex(latex) * Tue Jun 29 2010 pingou 1.6.8-1 - Update to version 1.6.8 * Sat Jun 05 2010 pingou 1.6.5-1 - Update to version 1.6.5 * Tue May 11 2010 pingou 1.6.1-1 - Update to version 1.6.1 * Sat Mar 27 2010 pingou 1.4.16-1 - Update to 1.4.16 * Thu Feb 11 2010 pingou 1.4.11-1 - Update to 1.4.11 * Mon Feb 01 2010 pingou 1.4.10-1 - Update to 1.4.10 * Thu Dec 17 2009 pingou 1.4.9-1 - Update to 1.4.9 * Sat Nov 21 2009 pingou 1.4.7-1 - Update to 1.4.7 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 * Fri Jul 24 2009 Fedora Release Engineering - 1.2.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Fri Jun 12 2009 pingou 1.2.3-1 - Update to 1.2.3 * Wed Apr 29 2009 pingou 1.2.0-2 - Update the file section to package doc - Update the Requires and BR to take into account R version * Tue Apr 28 2009 pingou 1.2.0-1 - Update to Bioconductor 2.4 and R-2.9.0 * Wed Apr 01 2009 pingou 1.1.55-1 - New release from bioconductor 2.4 which includes the change in the description file for the license used - Update the license to its correct format * Sun Mar 22 2009 pingou 1.0.14-3 - The main package owns the directory - Remove pkgconfig as R for the devel package - Define becomes global * Sat Mar 21 2009 pingou 1.0.14-2 - Add R-Matrix as R and BR * Fri Mar 13 2009 pingou 1.0.14-1 - Update to 1.0.14 * Wed Feb 18 2009 pingou 1.0.11-1 - initial package for Fedora