.gitignore

@@ -21,12 +21,3 @@ IRanges_1.6.8.tar.gz
 /IRanges_2.4.4.tar.gz
 /IRanges_2.8.1.tar.gz
 /IRanges_2.10.1.tar.gz
-/IRanges_2.12.0.tar.gz
-/IRanges_2.14.10.tar.gz
-/IRanges_2.16.0.tar.gz
-/IRanges_2.20.0.tar.gz
-/IRanges_2.20.1.tar.gz
-/IRanges_2.22.2.tar.gz
-/IRanges_2.24.1.tar.gz
-/IRanges_2.26.0.tar.gz
-/IRanges_2.30.1.tar.gz

R-IRanges.spec

@@ -1,28 +1,29 @@
 %global packname  IRanges
-%global Rvers     4.0.0
-%global suggests  0
+%global Rvers     3.4.0
+%global bootstrap 1
 
 Name:             R-%{packname}
-Version:          2.30.1
-Release:          9%{dist}
+Version:          2.10.1
+Release:          1%{dist}
 Summary:          Low-level containers for storing sets of integer ranges
+Group:            Applications/Engineering 
 License:          Artistic 2.0 and Copyright only
 # See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html
 URL:              http://bioconductor.org/packages/release/bioc/html/IRanges.html
 Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
+Requires:         R-core >= %{Rvers} R-RUnit R-methods R-stats R-utils R-stats4 R-BiocGenerics >= 0.21.1 R-S4Vectors >= 0.13.17
+# We can't require R-GenomicRanges until it has been built (it deps on R-IRanges)
+%if %{bootstrap} < 1
+Requires:         R-GenomicRanges
+%endif
 BuildRequires:    R-devel >= %{Rvers} tex(latex)
-BuildRequires:    R-methods R-stats R-RUnit R-utils R-stats4 R-BiocGenerics >= 0.39.2
-BuildRequires:    R-S4Vectors-devel >= 0.33.3
-%if %{suggests}
+BuildRequires:    R-methods R-stats R-RUnit R-utils R-stats4 R-BiocGenerics >= 0.21.1
+BuildRequires:    R-S4Vectors-devel >= 0.13.17
+# R-GenomicRanges is only needed for check, but it makes a dep loop
+%if %{bootstrap} < 1
 BuildRequires:    R-GenomicRanges
 BuildRequires:    R-BSgenome.Celegans.UCSC.ce2
 BuildRequires:    R-XVector
-BuildRequires:    R-Rsamtools
-BuildRequires:    R-GenomicAlignments
-BuildRequires:    R-GenomicFeatures
-BuildRequires:    R-pasillaBamSubset
-BuildRequires:    R-RUnit
-BuildRequires:    R-BiocStyle
 %endif
 
 %description
@@ -36,6 +37,7 @@ these regions.
 
 %package        devel
 Summary:        Development files for %{name}
+Group:          Development/Libraries
 Requires:       %{name} = %{version}-%{release}
 
 %description    devel
@@ -53,16 +55,15 @@ rm -rf %{buildroot}
 
 
 # x86/x86_64 -> Architecture dependent package
-mkdir -p %{buildroot}%{_libdir}/R/library
+mkdir -p %{buildroot}%{_libdir}/R/library 
 R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
 # Clean up in advance of check
 test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
 rm -rf %{buildroot}%{_libdir}/R/library/R.css
 
 %check
-%if %{suggests}
-%{_bindir}/R CMD check %{packname}
-%endif
+# disable check
+# %{_bindir}/R CMD check %{packname}
 
 %files
 %dir %{_libdir}/R/library/%{packname}/
@@ -84,99 +85,6 @@ rm -rf %{buildroot}%{_libdir}/R/library/R.css
 %{_libdir}/R/library/%{packname}/include
 
 %changelog
-* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-9
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
-
-* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-8
-- R-maint-sig mass rebuild
-
-* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-7
-- R-maint-sig mass rebuild
-
-* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-6
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
-
-* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-5
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
-
-* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
-
-* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-3
-- R-maint-sig mass rebuild
-
-* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
-
-* Sat Sep  3 2022 Tom Callaway <spot@fedoraproject.org> - 2.30.1-1
-- update to 2.30.1
-- rebuild for R 4.2.1
-
-* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
-
-* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 2.26.0-1
-- update to 2.26.0
-- Rebuilt for R 4.1.0
-
-* Wed Feb  3 2021 Tom Callaway <spot@fedoraproject.org> - 2.24.1-1
-- update to 2.24.1
-
-* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.22.2-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.22.2-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 2.22.2-1
-- update to 2.22.2
-- rebuild for R 4
-
-* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.20.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Wed Dec 18 2019 Tom Callaway <spot@fedoraproject.org> - 2.20.1-1
-- update to 2.20.1
-
-* Mon Nov  4 2019 Tom Callaway <spot@fedoraproject.org> - 2.20.0-1
-- update to 2.20.0
-
-* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.16.0-3
-- Remove explicit dependencies provided by automatic dependency generator
-
-* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
-
-* Fri Feb  8 2019 Tom Callaway <spot@fedoraproject.org> - 2.16.0-1
-- update to 2.16.0
-
-* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
-
-* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
-
-* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 2.14.10-1
-- update to 2.14.10, rebuild for R 3.5.0
-
-* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 2.12.0-1
-- update to 2.12.0
-
-* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
-
-* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
-
-* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
-
 * Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 2.10.1-1
 - update to 2.10.1
 

sources

@@ -1 +1 @@
-SHA512 (IRanges_2.30.1.tar.gz) = 387b5075714eaa12f6ff33516fb1790053d4c6200d02aad9f5660c2bcc1b1b26d863d6c5bab10e49fb8079b660d8a43087e8fbe4297df5831ec93b725099390b
+SHA512 (IRanges_2.10.1.tar.gz) = a856427a1d1d7f52df336024d0fad37b3df7650e1af40e749c13808167e23b10e234ba3548a2976f276f5256aba143a306c0d7dbb0e231471a21ea20e77da59b