Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild

Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>

.gitignore

@@ -6,3 +6,27 @@ IRanges_1.6.8.tar.gz
 /IRanges_1.8.8.tar.gz
 /IRanges_1.8.9.tar.gz
 /IRanges_1.10.4.tar.gz
+/IRanges_1.12.1.tar.gz
+/IRanges_1.14.4.tar.gz
+/IRanges_1.16.4.tar.gz
+/IRanges_1.16.5.tar.gz
+/IRanges_1.16.6.tar.gz
+/IRanges_1.18.0.tar.gz
+/IRanges_1.18.2.tar.gz
+/IRanges_1.20.6.tar.gz
+/IRanges_1.22.8.tar.gz
+/IRanges_1.22.9.tar.gz
+/IRanges_2.2.1.tar.gz
+/IRanges_2.2.5.tar.gz
+/IRanges_2.4.4.tar.gz
+/IRanges_2.8.1.tar.gz
+/IRanges_2.10.1.tar.gz
+/IRanges_2.12.0.tar.gz
+/IRanges_2.14.10.tar.gz
+/IRanges_2.16.0.tar.gz
+/IRanges_2.20.0.tar.gz
+/IRanges_2.20.1.tar.gz
+/IRanges_2.22.2.tar.gz
+/IRanges_2.24.1.tar.gz
+/IRanges_2.26.0.tar.gz
+/IRanges_2.30.1.tar.gz

CHANGELOG.yml

@@ -0,0 +1,3 @@
+- nevr: R-IRanges-2.8.1-1
+  changelog: Update to 2.8.1
+  update_type: enhancement

R-IRanges.spec

@@ -1,20 +1,29 @@
 %global packname  IRanges
-%global Rvers     2.12.0
+%global Rvers     4.0.0
+%global suggests  0
 
 Name:             R-%{packname}
-Version:          1.10.4
-Release:          1%{dist}
+Version:          2.30.1
+Release:          9%{dist}
 Summary:          Low-level containers for storing sets of integer ranges
-
-Group:            Applications/Engineering 
 License:          Artistic 2.0 and Copyright only
 # See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html
 URL:              http://bioconductor.org/packages/release/bioc/html/IRanges.html
 Source0:          http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
-
-Requires:         R-core >= %{Rvers} R-methods R-stats R-RUnit R-Matrix
-BuildRequires:    R-devel >= %{Rvers} tex(latex)  R-methods R-stats R-RUnit R-Matrix 
+BuildRequires:    R-devel >= %{Rvers} tex(latex)
+BuildRequires:    R-methods R-stats R-RUnit R-utils R-stats4 R-BiocGenerics >= 0.39.2
+BuildRequires:    R-S4Vectors-devel >= 0.33.3
+%if %{suggests}
+BuildRequires:    R-GenomicRanges
+BuildRequires:    R-BSgenome.Celegans.UCSC.ce2
+BuildRequires:    R-XVector
+BuildRequires:    R-Rsamtools
+BuildRequires:    R-GenomicAlignments
+BuildRequires:    R-GenomicFeatures
+BuildRequires:    R-pasillaBamSubset
+BuildRequires:    R-RUnit
+BuildRequires:    R-BiocStyle
+%endif
 
 %description
 The IRanges class and its extensions are low-level containers
@@ -27,7 +36,6 @@ these regions.
 
 %package        devel
 Summary:        Development files for %{name}
-Group:          Development/Libraries
 Requires:       %{name} = %{version}-%{release}
 
 %description    devel
@@ -45,24 +53,24 @@ rm -rf %{buildroot}
 
 
 # x86/x86_64 -> Architecture dependent package
-mkdir -p %{buildroot}%{_libdir}/R/library 
+mkdir -p %{buildroot}%{_libdir}/R/library
 R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
 # Clean up in advance of check
 test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
 rm -rf %{buildroot}%{_libdir}/R/library/R.css
 
 %check
+%if %{suggests}
 %{_bindir}/R CMD check %{packname}
-
-%clean
-rm -rf %{buildroot}
+%endif
 
 %files
-%defattr(-, root, root, -)
 %dir %{_libdir}/R/library/%{packname}/
 %doc %{_libdir}/R/library/%{packname}/doc
 %doc %{_libdir}/R/library/%{packname}/html
-%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/CITATION
+%{_libdir}/R/library/%{packname}/DESCRIPTION
+%doc %{_libdir}/R/library/%{packname}/NEWS
 %{_libdir}/R/library/%{packname}/INDEX
 %{_libdir}/R/library/%{packname}/NAMESPACE
 %{_libdir}/R/library/%{packname}/extdata
@@ -73,10 +81,189 @@ rm -rf %{buildroot}
 %{_libdir}/R/library/%{packname}/unitTests
 
 %files devel
-%defattr(-,root,root,-)
 %{_libdir}/R/library/%{packname}/include
 
 %changelog
+* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-9
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
+
+* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-8
+- R-maint-sig mass rebuild
+
+* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-7
+- R-maint-sig mass rebuild
+
+* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-6
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
+
+* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-5
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
+
+* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
+
+* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 2.30.1-3
+- R-maint-sig mass rebuild
+
+* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.30.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
+
+* Sat Sep  3 2022 Tom Callaway <spot@fedoraproject.org> - 2.30.1-1
+- update to 2.30.1
+- rebuild for R 4.2.1
+
+* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
+
+* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
+
+* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.26.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 2.26.0-1
+- update to 2.26.0
+- Rebuilt for R 4.1.0
+
+* Wed Feb  3 2021 Tom Callaway <spot@fedoraproject.org> - 2.24.1-1
+- update to 2.24.1
+
+* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.22.2-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.22.2-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 2.22.2-1
+- update to 2.22.2
+- rebuild for R 4
+
+* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.20.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
+
+* Wed Dec 18 2019 Tom Callaway <spot@fedoraproject.org> - 2.20.1-1
+- update to 2.20.1
+
+* Mon Nov  4 2019 Tom Callaway <spot@fedoraproject.org> - 2.20.0-1
+- update to 2.20.0
+
+* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.16.0-3
+- Remove explicit dependencies provided by automatic dependency generator
+
+* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.0-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
+
+* Fri Feb  8 2019 Tom Callaway <spot@fedoraproject.org> - 2.16.0-1
+- update to 2.16.0
+
+* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
+
+* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
+
+* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 2.14.10-1
+- update to 2.14.10, rebuild for R 3.5.0
+
+* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 2.12.0-1
+- update to 2.12.0
+
+* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
+
+* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
+
+* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
+
+* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 2.10.1-1
+- update to 2.10.1
+
+* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
+
+* Fri Jan 20 2017 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.8.1-1
+- Update to 2.8.1
+
+* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.4-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
+
+* Mon Dec  7 2015 Tom Callaway <spot@fedoraproject.org> - 2.4.4-1
+- update to 2.4.4
+
+* Fri Jul 03 2015 pingou <pingou@pingoured.fr> 2.2.5-1
+- Update to version 2.2.5
+
+* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
+
+* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 2.2.1-1
+- update to 2.2.1
+- fix DESCRIPTION to not be doc
+- bootstrap pass
+
+* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.9-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
+
+* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.22.9-1
+- Update to version 1.22.9
+
+* Mon Jun  9 2014 Tom Callaway <spot@fedoraproject.org> - 1.22.8-1
+- update to 1.22.8
+
+* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.6-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
+
+* Mon Feb  3 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-2
+- fix XVector to be a conditionalized BR
+
+* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.20.6-1
+- Update to version 1.20.6
+
+* Fri Jan 24 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-1
+- update to 1.20.6
+
+* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.2-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
+
+* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.18.2-1
+- Update to version 1.18.2
+
+* Mon Apr 15 2013 Tom Callaway <spot@fedoraproject.org> - 1.18.0-2
+- disable bootstrap
+
+* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.18.0-1
+- Update to version 1.18.0
+
+* Thu Feb 28 2013 pingou <pingou@pingoured.fr> 1.16.6-1
+- Update to version 1.16.6
+
+* Wed Feb 13 2013 pingou <pingou@pingoured.fr> 1.16.5-1
+- Update to version 1.16.5
+
+* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.4-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
+
+* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.16.4-1
+- Update to version 1.16.4
+- + BR: R-GenomicRanges
+
+* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-2
+- + BR: R-BiocGenerics
+
+* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-1
+- Update to version 1.14.4
+
+* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
+
+* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
+
+* Wed Nov  9 2011 Tom Callaway <spot@fedoraproject.org> 1.12.1-1
+- update to 1.12.1
+
 * Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.10.4-1
 - Update to version 1.10.4
 
@@ -122,7 +309,7 @@ rm -rf %{buildroot}
 * Sat Mar 27 2010 pingou <pingou@pingoured.fr> 1.4.16-1
 - Update to 1.4.16
 
-* Mon Feb 11 2010 pingou <pingou@pingoured.fr> 1.4.11-1
+* Thu Feb 11 2010 pingou <pingou@pingoured.fr> 1.4.11-1
 - Update to 1.4.11
 
 * Mon Feb 01 2010 pingou <pingou@pingoured.fr> 1.4.10-1

sources

@@ -1 +1 @@
-1eda38653b725b2a81701e73229d5204  IRanges_1.10.4.tar.gz
+SHA512 (IRanges_2.30.1.tar.gz) = 387b5075714eaa12f6ff33516fb1790053d4c6200d02aad9f5660c2bcc1b1b26d863d6c5bab10e49fb8079b660d8a43087e8fbe4297df5831ec93b725099390b