Unretirement request: https://pagure.io/releng/issue/8954
Signed-off-by: Tomas Hrcka <thrcka@redhat.com>
This commit is contained in:
Tomas Hrcka
parent
0ea156b687
commit
2360956b65
26
.gitignore
vendored
Normal file
26
.gitignore
vendored
Normal file
@ -0,0 +1,26 @@
|
||||
IRanges_1.6.8.tar.gz
|
||||
/IRanges_1.6.16.tar.gz
|
||||
/IRanges_1.6.17.tar.gz
|
||||
/IRanges_1.8.3.tar.gz
|
||||
/IRanges_1.8.7.tar.gz
|
||||
/IRanges_1.8.8.tar.gz
|
||||
/IRanges_1.8.9.tar.gz
|
||||
/IRanges_1.10.4.tar.gz
|
||||
/IRanges_1.12.1.tar.gz
|
||||
/IRanges_1.14.4.tar.gz
|
||||
/IRanges_1.16.4.tar.gz
|
||||
/IRanges_1.16.5.tar.gz
|
||||
/IRanges_1.16.6.tar.gz
|
||||
/IRanges_1.18.0.tar.gz
|
||||
/IRanges_1.18.2.tar.gz
|
||||
/IRanges_1.20.6.tar.gz
|
||||
/IRanges_1.22.8.tar.gz
|
||||
/IRanges_1.22.9.tar.gz
|
||||
/IRanges_2.2.1.tar.gz
|
||||
/IRanges_2.2.5.tar.gz
|
||||
/IRanges_2.4.4.tar.gz
|
||||
/IRanges_2.8.1.tar.gz
|
||||
/IRanges_2.10.1.tar.gz
|
||||
/IRanges_2.12.0.tar.gz
|
||||
/IRanges_2.14.10.tar.gz
|
||||
/IRanges_2.16.0.tar.gz
|
||||
3
CHANGELOG.yml
Normal file
3
CHANGELOG.yml
Normal file
@ -0,0 +1,3 @@
|
||||
- nevr: R-IRanges-2.8.1-1
|
||||
changelog: Update to 2.8.1
|
||||
update_type: enhancement
|
||||
290
R-IRanges.spec
Normal file
290
R-IRanges.spec
Normal file
@ -0,0 +1,290 @@
|
||||
%global packname IRanges
|
||||
%global Rvers 3.5.0
|
||||
%global bootstrap 1
|
||||
|
||||
Name: R-%{packname}
|
||||
Version: 2.16.0
|
||||
Release: 3%{dist}
|
||||
Summary: Low-level containers for storing sets of integer ranges
|
||||
License: Artistic 2.0 and Copyright only
|
||||
# See https://www.redhat.com/archives/fedora-r-devel-list/2009-April/msg00001.html
|
||||
URL: http://bioconductor.org/packages/release/bioc/html/IRanges.html
|
||||
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
|
||||
# We can't require R-GenomicRanges until it has been built (it deps on R-IRanges)
|
||||
%if %{bootstrap} < 1
|
||||
%endif
|
||||
BuildRequires: R-devel >= %{Rvers} tex(latex)
|
||||
BuildRequires: R-methods R-stats R-RUnit R-utils R-stats4 R-BiocGenerics >= 0.25.3
|
||||
BuildRequires: R-S4Vectors-devel >= 0.19.11
|
||||
# R-GenomicRanges is only needed for check, but it makes a dep loop
|
||||
%if %{bootstrap} < 1
|
||||
BuildRequires: R-GenomicRanges
|
||||
BuildRequires: R-BSgenome.Celegans.UCSC.ce2
|
||||
BuildRequires: R-XVector
|
||||
%endif
|
||||
|
||||
%description
|
||||
The IRanges class and its extensions are low-level containers
|
||||
for storing sets of integer ranges. A typical use of these containers
|
||||
in biology is for representing a set of chromosome regions.
|
||||
More specific extensions of the IRanges class will typically
|
||||
allow the storage of additional information attached to each
|
||||
chromosome region as well as a hierarchical relationship between
|
||||
these regions.
|
||||
|
||||
%package devel
|
||||
Summary: Development files for %{name}
|
||||
Requires: %{name} = %{version}-%{release}
|
||||
|
||||
%description devel
|
||||
The %{name}-devel package contains libraries and header files for
|
||||
developing applications that use %{name}.
|
||||
|
||||
|
||||
%prep
|
||||
%setup -q -c -n %{packname}
|
||||
|
||||
%build
|
||||
|
||||
%install
|
||||
rm -rf %{buildroot}
|
||||
|
||||
|
||||
# x86/x86_64 -> Architecture dependent package
|
||||
mkdir -p %{buildroot}%{_libdir}/R/library
|
||||
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
|
||||
# Clean up in advance of check
|
||||
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
|
||||
rm -rf %{buildroot}%{_libdir}/R/library/R.css
|
||||
|
||||
%check
|
||||
# disable check
|
||||
# %{_bindir}/R CMD check %{packname}
|
||||
|
||||
%files
|
||||
%dir %{_libdir}/R/library/%{packname}/
|
||||
%doc %{_libdir}/R/library/%{packname}/doc
|
||||
%doc %{_libdir}/R/library/%{packname}/html
|
||||
%doc %{_libdir}/R/library/%{packname}/CITATION
|
||||
%{_libdir}/R/library/%{packname}/DESCRIPTION
|
||||
%doc %{_libdir}/R/library/%{packname}/NEWS
|
||||
%{_libdir}/R/library/%{packname}/INDEX
|
||||
%{_libdir}/R/library/%{packname}/NAMESPACE
|
||||
%{_libdir}/R/library/%{packname}/extdata
|
||||
%{_libdir}/R/library/%{packname}/Meta
|
||||
%{_libdir}/R/library/%{packname}/help
|
||||
%{_libdir}/R/library/%{packname}/R
|
||||
%{_libdir}/R/library/%{packname}/libs
|
||||
%{_libdir}/R/library/%{packname}/unitTests
|
||||
|
||||
%files devel
|
||||
%{_libdir}/R/library/%{packname}/include
|
||||
|
||||
%changelog
|
||||
* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.16.0-3
|
||||
- Remove explicit dependencies provided by automatic dependency generator
|
||||
|
||||
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.16.0-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
|
||||
|
||||
* Fri Feb 8 2019 Tom Callaway <spot@fedoraproject.org> - 2.16.0-1
|
||||
- update to 2.16.0
|
||||
|
||||
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
|
||||
|
||||
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.14.10-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
|
||||
|
||||
* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 2.14.10-1
|
||||
- update to 2.14.10, rebuild for R 3.5.0
|
||||
|
||||
* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 2.12.0-1
|
||||
- update to 2.12.0
|
||||
|
||||
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-4
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
||||
|
||||
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
||||
|
||||
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.10.1-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
||||
|
||||
* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 2.10.1-1
|
||||
- update to 2.10.1
|
||||
|
||||
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.1-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
|
||||
|
||||
* Fri Jan 20 2017 Pierre-Yves Chibon <pingou@pingoured.fr> - 2.8.1-1
|
||||
- Update to 2.8.1
|
||||
|
||||
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.4-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
|
||||
|
||||
* Mon Dec 7 2015 Tom Callaway <spot@fedoraproject.org> - 2.4.4-1
|
||||
- update to 2.4.4
|
||||
|
||||
* Fri Jul 03 2015 pingou <pingou@pingoured.fr> 2.2.5-1
|
||||
- Update to version 2.2.5
|
||||
|
||||
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.2.1-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
|
||||
|
||||
* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 2.2.1-1
|
||||
- update to 2.2.1
|
||||
- fix DESCRIPTION to not be doc
|
||||
- bootstrap pass
|
||||
|
||||
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.22.9-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
|
||||
|
||||
* Wed Jul 02 2014 pingou <pingou@pingoured.fr> 1.22.9-1
|
||||
- Update to version 1.22.9
|
||||
|
||||
* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 1.22.8-1
|
||||
- update to 1.22.8
|
||||
|
||||
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.6-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
|
||||
|
||||
* Mon Feb 3 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-2
|
||||
- fix XVector to be a conditionalized BR
|
||||
|
||||
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.20.6-1
|
||||
- Update to version 1.20.6
|
||||
|
||||
* Fri Jan 24 2014 Tom Callaway <spot@fedoraproject.org> - 1.20.6-1
|
||||
- update to 1.20.6
|
||||
|
||||
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.18.2-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
|
||||
|
||||
* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.18.2-1
|
||||
- Update to version 1.18.2
|
||||
|
||||
* Mon Apr 15 2013 Tom Callaway <spot@fedoraproject.org> - 1.18.0-2
|
||||
- disable bootstrap
|
||||
|
||||
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.18.0-1
|
||||
- Update to version 1.18.0
|
||||
|
||||
* Thu Feb 28 2013 pingou <pingou@pingoured.fr> 1.16.6-1
|
||||
- Update to version 1.16.6
|
||||
|
||||
* Wed Feb 13 2013 pingou <pingou@pingoured.fr> 1.16.5-1
|
||||
- Update to version 1.16.5
|
||||
|
||||
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.4-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
|
||||
|
||||
* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.16.4-1
|
||||
- Update to version 1.16.4
|
||||
- + BR: R-GenomicRanges
|
||||
|
||||
* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-2
|
||||
- + BR: R-BiocGenerics
|
||||
|
||||
* Mon Jul 23 2012 pingou <pingou@pingoured.fr> 1.14.4-1
|
||||
- Update to version 1.14.4
|
||||
|
||||
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
|
||||
|
||||
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.1-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
|
||||
|
||||
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.12.1-1
|
||||
- update to 1.12.1
|
||||
|
||||
* Wed Jun 22 2011 pingou <pingou@pingoured.fr> 1.10.4-1
|
||||
- Update to version 1.10.4
|
||||
|
||||
* Tue Mar 15 2011 pingou <pingou@pingoured.fr> 1.8.9-1
|
||||
- Update to version 1.8.9
|
||||
|
||||
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.8.8-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
|
||||
|
||||
* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.8.8-1
|
||||
- Update to version 1.8.8
|
||||
|
||||
* Mon Dec 13 2010 pingou <pingou@pingoured.fr> 1.8.7-1
|
||||
- Update to version 1.8.7
|
||||
|
||||
* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.8.3-1
|
||||
- Update to version 1.8.3
|
||||
|
||||
* Sun Nov 07 2010 pingou <pingou@pingoured.fr> 1.8.2-1
|
||||
- Update to version 1.8.2
|
||||
- Change requires from R to R-core
|
||||
|
||||
* Thu Oct 14 2010 pingou <pingou@pingoured.fr> 1.6.17-1
|
||||
- Update to version 1.6.17
|
||||
|
||||
* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.6.16-1
|
||||
- Update to version 1.6.16
|
||||
|
||||
* Mon Jul 05 2010 pingou <pingou@pingoured.fr> 1.6.8-2
|
||||
- Remove Require post and postun
|
||||
- Change the URL and source0 to a more stable form
|
||||
- Fix BR to tex(latex)
|
||||
|
||||
* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.6.8-1
|
||||
- Update to version 1.6.8
|
||||
|
||||
* Sat Jun 05 2010 pingou <pingou@pingoured.fr> 1.6.5-1
|
||||
- Update to version 1.6.5
|
||||
|
||||
* Tue May 11 2010 pingou <pingou@pingoured.fr> 1.6.1-1
|
||||
- Update to version 1.6.1
|
||||
|
||||
* Sat Mar 27 2010 pingou <pingou@pingoured.fr> 1.4.16-1
|
||||
- Update to 1.4.16
|
||||
|
||||
* Thu Feb 11 2010 pingou <pingou@pingoured.fr> 1.4.11-1
|
||||
- Update to 1.4.11
|
||||
|
||||
* Mon Feb 01 2010 pingou <pingou@pingoured.fr> 1.4.10-1
|
||||
- Update to 1.4.10
|
||||
|
||||
* Thu Dec 17 2009 pingou <pingou@pingoured.fr> 1.4.9-1
|
||||
- Update to 1.4.9
|
||||
|
||||
* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.4.7-1
|
||||
- Update to 1.4.7
|
||||
- Remove %%post and %%postun
|
||||
- Adapt %%files to R-2.10.0
|
||||
|
||||
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
|
||||
|
||||
* Fri Jun 12 2009 pingou <pingou@pingoured.fr> 1.2.3-1
|
||||
- Update to 1.2.3
|
||||
|
||||
* Wed Apr 29 2009 pingou <pingou@pingoured.fr> 1.2.0-2
|
||||
- Update the file section to package doc
|
||||
- Update the Requires and BR to take into account R version
|
||||
|
||||
* Tue Apr 28 2009 pingou <pingou@pingoured.fr> 1.2.0-1
|
||||
- Update to Bioconductor 2.4 and R-2.9.0
|
||||
|
||||
* Wed Apr 01 2009 pingou <pingou@pingoured.fr> 1.1.55-1
|
||||
- New release from bioconductor 2.4 which includes the change in
|
||||
the description file for the license used
|
||||
- Update the license to its correct format
|
||||
|
||||
* Sun Mar 22 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-3
|
||||
- The main package owns the directory
|
||||
- Remove pkgconfig as R for the devel package
|
||||
- Define becomes global
|
||||
|
||||
* Sat Mar 21 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-2
|
||||
- Add R-Matrix as R and BR
|
||||
|
||||
* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 1.0.14-1
|
||||
- Update to 1.0.14
|
||||
|
||||
* Wed Feb 18 2009 pingou <pingou -AT- pingoured.fr> 1.0.11-1
|
||||
- initial package for Fedora
|
||||
@ -1 +0,0 @@
|
||||
Orphaned for 6+ weeks
|
||||
Loading…
Reference in New Issue
Block a user