110 lines
3.4 KiB
RPMSpec
110 lines
3.4 KiB
RPMSpec
%global packname GenomicRanges
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%global rlibdir %{_libdir}/R/library
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Name: R-%{packname}
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Version: 1.6.2
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Release: 2%{dist}
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Summary: Representation and manipulation of genomic intervals
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Group: Applications/Engineering
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License: Artistic 2.0
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URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
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Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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Requires: R-core >= 2.8.0 R-methods R-IRanges >= 1.11.26
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BuildRequires: R-devel tex(latex) R >= 2.8.0 R-methods R-IRanges-devel >= 1.11.26
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%description
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The ability to efficiently store genomic annotations and alignments is
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playing a central role when it comes to analyze high-throughput sequencing
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data (a.k.a. NGS data). The package defines general purpose containers for
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storing genomic intervals as well as more specialized containers for
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storing alignments against a reference genome.
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%prep
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%setup -q -c -n %{packname}
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%build
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%install
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rm -rf %{buildroot}
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mkdir -p %{buildroot}%{rlibdir}
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%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
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test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
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rm -f %{buildroot}%{rlibdir}/R.css
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%check
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# Circular dependencies:
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# R-BSgenome depends on R-GenomicRanges which
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# suggests to have R-BSgenome
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#%%{_bindir}/R CMD check %%{packname}
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%clean
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rm -rf %{buildroot}
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%files
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%defattr(-, root, root, -)
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%dir %{rlibdir}/%{packname}/
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%doc %{rlibdir}/%{packname}/doc/
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%doc %{rlibdir}/%{packname}/html/
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%doc %{rlibdir}/%{packname}/DESCRIPTION
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%doc %{rlibdir}/%{packname}/NEWS
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%{rlibdir}/%{packname}/INDEX
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%{rlibdir}/%{packname}/NAMESPACE
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%{rlibdir}/%{packname}/Meta/
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%{rlibdir}/%{packname}/R/
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%{rlibdir}/%{packname}/extdata/
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%{rlibdir}/%{packname}/help/
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%{rlibdir}/%{packname}/scripts/
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%{rlibdir}/%{packname}/unitTests/
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%{rlibdir}/%{packname}/libs/
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%changelog
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* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
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* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.6.2-1
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- update to 1.6.2
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* Sat Jul 02 2011 pingou <pingou@pingoured.fr> 1.4.6-1
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- Update to version 1.4.6
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* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
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* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.2.3-1
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- Update to version 1.2.3
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* Mon Dec 20 2010 pingou <pingou@pingoured.fr> 1.2.2-1
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- Update to version 1.2.2
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* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.2.1-1
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- Update to version 1.2.1
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* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.2.0-1
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- Update to version 1.2.0
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* Wed Sep 29 2010 jkeating - 1.0.9-2
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- Rebuilt for gcc bug 634757
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* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.0.9-1
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- Update to version 1.0.9
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* Tue Aug 17 2010 pingou <pingou@pingoured.fr> 1.0.7-2
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- Change Require from R to R-core
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* Thu Jul 29 2010 pingou <pingou@pingoured.fr> 1.0.7-1
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- Update to 1.0.7
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- End directory by / in %%files
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* Mon Jul 19 2010 pingou <pingou@pingoured.fr> 1.0.6-1
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- Update to 1.0.6
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- End directory by / in %%files
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- Change URL
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- Fix typo in the comment of check (dependencies)
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- Add dependencie to R-IRanges-devel
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* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.0.5-1
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- initial package for Fedora
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