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R-GenomicRanges/R-GenomicRanges.spec

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%global packname GenomicRanges
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.48.0
Release: 3%{dist}
Summary: Representation and manipulation of genomic intervals
License: Artistic 2.0
URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRequires: R-devel tex(latex) R-core >= 4.0.0 R-methods R-stats4 R-utils R-stats
BuildRequires: R-IRanges-devel >= 2.23.9 R-BiocGenerics >= 0.37.0 R-XVector-devel >= 0.29.2 R-GenomeInfoDb >= 1.15.2 R-S4Vectors-devel >= 0.27.12
%description
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%check
# Circular dependencies:
# R-BSgenome depends on R-GenomicRanges which
# suggests to have R-BSgenome
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}/
%doc %{rlibdir}/%{packname}/doc/
%doc %{rlibdir}/%{packname}/html/
%doc %{rlibdir}/%{packname}/CITATION
%{rlibdir}/%{packname}/DESCRIPTION
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta/
%{rlibdir}/%{packname}/R/
%{rlibdir}/%{packname}/extdata/
%{rlibdir}/%{packname}/help/
%{rlibdir}/%{packname}/unitTests/
%{rlibdir}/%{packname}/scripts/
%{rlibdir}/%{packname}/libs/
%changelog
* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.48.0-3
- R-maint-sig mass rebuild
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.48.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Sat Sep 3 2022 Tom Callaway <spot@fedoraproject.org> - 1.48.0-1
- update to 1.48.0
- rebuild for R 4.2.1
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 1.44.0-1
- update to 1.44.0
- Rebuilt for R 4.1.0
* Thu Feb 4 2021 Tom Callaway <spot@fedoraproject.org> - 1.42.0-1
- update to 1.42.0
* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.40.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.40.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Mon Jun 8 2020 Tom Callaway <spot@fedoraproject.org> - 1.40.0-1
- update to 1.40.0
- rebuild for R 4
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.38.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Mon Nov 4 2019 Tom Callaway <spot@fedoraproject.org> - 1.38.0-1
- update to 1.38.0
* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.34.0-3
- Remove explicit dependencies provided by automatic dependency generator
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.34.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Wed Feb 6 2019 Tom Callaway <spot@fedoraproject.org> - 1.34.0-1
- update to 1.34.0
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Thu May 17 2018 Tom Callaway <spot@fedoraproject.org> - 1.32.3-1
- update to 1.32.3
* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 1.30.3-1
- update to 1.30.3
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Tue May 30 2017 Tom Callaway <spot@fedoraproject.org> - 1.28.3-1
- update to 1.28.3
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Mon Dec 7 2015 Tom Callaway <spot@fedoraproject.org> - 1.22.1-1
- update to 1.22.1
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 1.20.3-1
- update to 1.20.3
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 1.16.3-1
- update to 1.16.3
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.14.4-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.14.4-1
- Update to version 1.14.4
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.4-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.12.4-1
- Update to version 1.12.4
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.12.1-1
- Update to version 1.12.1
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.5-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.10.5-1
- Update to version 1.10.5
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.6.2-1
- update to 1.6.2
* Sat Jul 02 2011 pingou <pingou@pingoured.fr> 1.4.6-1
- Update to version 1.4.6
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.2.3-1
- Update to version 1.2.3
* Mon Dec 20 2010 pingou <pingou@pingoured.fr> 1.2.2-1
- Update to version 1.2.2
* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.2.1-1
- Update to version 1.2.1
* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.2.0-1
- Update to version 1.2.0
* Wed Sep 29 2010 jkeating - 1.0.9-2
- Rebuilt for gcc bug 634757
* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.0.9-1
- Update to version 1.0.9
* Tue Aug 17 2010 pingou <pingou@pingoured.fr> 1.0.7-2
- Change Require from R to R-core
* Thu Jul 29 2010 pingou <pingou@pingoured.fr> 1.0.7-1
- Update to 1.0.7
- End directory by / in %%files
* Mon Jul 19 2010 pingou <pingou@pingoured.fr> 1.0.6-1
- Update to 1.0.6
- End directory by / in %%files
- Change URL
- Fix typo in the comment of check (dependencies)
- Add dependencie to R-IRanges-devel
* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.0.5-1
- initial package for Fedora
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