R-GenomicRanges/R-GenomicRanges.spec

110 lines
3.4 KiB
RPMSpec

%global packname GenomicRanges
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.6.2
Release: 2%{dist}
Summary: Representation and manipulation of genomic intervals
Group: Applications/Engineering
License: Artistic 2.0
URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R-core >= 2.8.0 R-methods R-IRanges >= 1.11.26
BuildRequires: R-devel tex(latex) R >= 2.8.0 R-methods R-IRanges-devel >= 1.11.26
%description
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%check
# Circular dependencies:
# R-BSgenome depends on R-GenomicRanges which
# suggests to have R-BSgenome
#%%{_bindir}/R CMD check %%{packname}
%clean
rm -rf %{buildroot}
%files
%defattr(-, root, root, -)
%dir %{rlibdir}/%{packname}/
%doc %{rlibdir}/%{packname}/doc/
%doc %{rlibdir}/%{packname}/html/
%doc %{rlibdir}/%{packname}/DESCRIPTION
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta/
%{rlibdir}/%{packname}/R/
%{rlibdir}/%{packname}/extdata/
%{rlibdir}/%{packname}/help/
%{rlibdir}/%{packname}/scripts/
%{rlibdir}/%{packname}/unitTests/
%{rlibdir}/%{packname}/libs/
%changelog
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.6.2-1
- update to 1.6.2
* Sat Jul 02 2011 pingou <pingou@pingoured.fr> 1.4.6-1
- Update to version 1.4.6
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.2.3-1
- Update to version 1.2.3
* Mon Dec 20 2010 pingou <pingou@pingoured.fr> 1.2.2-1
- Update to version 1.2.2
* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.2.1-1
- Update to version 1.2.1
* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.2.0-1
- Update to version 1.2.0
* Wed Sep 29 2010 jkeating - 1.0.9-2
- Rebuilt for gcc bug 634757
* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.0.9-1
- Update to version 1.0.9
* Tue Aug 17 2010 pingou <pingou@pingoured.fr> 1.0.7-2
- Change Require from R to R-core
* Thu Jul 29 2010 pingou <pingou@pingoured.fr> 1.0.7-1
- Update to 1.0.7
- End directory by / in %%files
* Mon Jul 19 2010 pingou <pingou@pingoured.fr> 1.0.6-1
- Update to 1.0.6
- End directory by / in %%files
- Change URL
- Fix typo in the comment of check (dependencies)
- Add dependencie to R-IRanges-devel
* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.0.5-1
- initial package for Fedora