%global packname GenomicRanges %global rlibdir %{_libdir}/R/library Name: R-%{packname} Version: 1.22.1 Release: 2%{dist} Summary: Representation and manipulation of genomic intervals Group: Applications/Engineering License: Artistic 2.0 URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R-core >= 3.0.0 R-methods R-IRanges >= 2.3.24 R-BiocGenerics >= 0.16.1 R-XVector R-GenomeInfoDb >= 1.1.20 R-S4Vectors >= 0.8.1 BuildRequires: R-devel tex(latex) R >= 3.0.0 R-methods R-IRanges-devel >= 2.3.24 R-BiocGenerics >= 0.16.1 R-XVector-devel R-GenomeInfoDb >= 1.1.20 R-S4Vectors-devel >= 0.8.1 %description The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome. %prep %setup -q -c -n %{packname} %build %install rm -rf %{buildroot} mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css %check # Circular dependencies: # R-BSgenome depends on R-GenomicRanges which # suggests to have R-BSgenome #%%{_bindir}/R CMD check %%{packname} %clean rm -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{rlibdir}/%{packname}/ %doc %{rlibdir}/%{packname}/doc/ %doc %{rlibdir}/%{packname}/html/ %doc %{rlibdir}/%{packname}/CITATION %{rlibdir}/%{packname}/DESCRIPTION %doc %{rlibdir}/%{packname}/NEWS %{rlibdir}/%{packname}/INDEX %{rlibdir}/%{packname}/NAMESPACE %{rlibdir}/%{packname}/Meta/ %{rlibdir}/%{packname}/R/ %{rlibdir}/%{packname}/extdata/ %{rlibdir}/%{packname}/help/ %{rlibdir}/%{packname}/unitTests/ %{rlibdir}/%{packname}/scripts/ %{rlibdir}/%{packname}/libs/ %changelog * Wed Feb 03 2016 Fedora Release Engineering - 1.22.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Mon Dec 7 2015 Tom Callaway - 1.22.1-1 - update to 1.22.1 * Tue Jun 16 2015 Fedora Release Engineering - 1.20.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri May 29 2015 Tom Callaway - 1.20.3-1 - update to 1.20.3 * Fri Aug 15 2014 Fedora Release Engineering - 1.16.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Mon Jun 9 2014 Tom Callaway - 1.16.3-1 - update to 1.16.3 * Fri Jun 06 2014 Fedora Release Engineering - 1.14.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Jan 27 2014 pingou 1.14.4-1 - Update to version 1.14.4 * Fri Aug 02 2013 Fedora Release Engineering - 1.12.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Tue Jul 16 2013 pingou 1.12.4-1 - Update to version 1.12.4 * Sun Apr 07 2013 pingou 1.12.1-1 - Update to version 1.12.1 * Wed Feb 13 2013 Fedora Release Engineering - 1.10.5-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 1.10.5-1 - Update to version 1.10.5 * Wed Jul 18 2012 Fedora Release Engineering - 1.6.2-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 1.6.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway 1.6.2-1 - update to 1.6.2 * Sat Jul 02 2011 pingou 1.4.6-1 - Update to version 1.4.6 * Mon Feb 07 2011 Fedora Release Engineering - 1.2.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Tue Jan 18 2011 pingou 1.2.3-1 - Update to version 1.2.3 * Mon Dec 20 2010 pingou 1.2.2-1 - Update to version 1.2.2 * Thu Nov 25 2010 pingou 1.2.1-1 - Update to version 1.2.1 * Tue Oct 26 2010 pingou 1.2.0-1 - Update to version 1.2.0 * Wed Sep 29 2010 jkeating - 1.0.9-2 - Rebuilt for gcc bug 634757 * Tue Sep 07 2010 pingou 1.0.9-1 - Update to version 1.0.9 * Tue Aug 17 2010 pingou 1.0.7-2 - Change Require from R to R-core * Thu Jul 29 2010 pingou 1.0.7-1 - Update to 1.0.7 - End directory by / in %%files * Mon Jul 19 2010 pingou 1.0.6-1 - Update to 1.0.6 - End directory by / in %%files - Change URL - Fix typo in the comment of check (dependencies) - Add dependencie to R-IRanges-devel * Tue Jun 29 2010 pingou 1.0.5-1 - initial package for Fedora