Merge branch 'master' into f19

.gitignore

@@ -8,16 +8,3 @@ GenomicRanges_1.0.7.tar.gz
 /GenomicRanges_1.10.5.tar.gz
 /GenomicRanges_1.12.1.tar.gz
 /GenomicRanges_1.12.4.tar.gz
-/GenomicRanges_1.14.4.tar.gz
-/GenomicRanges_1.16.3.tar.gz
-/GenomicRanges_1.20.3.tar.gz
-/GenomicRanges_1.22.1.tar.gz
-/GenomicRanges_1.28.3.tar.gz
-/GenomicRanges_1.30.3.tar.gz
-/GenomicRanges_1.32.3.tar.gz
-/GenomicRanges_1.34.0.tar.gz
-/GenomicRanges_1.38.0.tar.gz
-/GenomicRanges_1.40.0.tar.gz
-/GenomicRanges_1.42.0.tar.gz
-/GenomicRanges_1.44.0.tar.gz
-/GenomicRanges_1.48.0.tar.gz

R-GenomicRanges.spec

@@ -2,14 +2,18 @@
 %global rlibdir %{_libdir}/R/library
 
 Name:             R-%{packname}
-Version:          1.48.0
-Release:          3%{dist}
+Version:          1.12.4
+Release:          1%{dist}
 Summary:          Representation and manipulation of genomic intervals
+
+Group:            Applications/Engineering 
 License:          Artistic 2.0
 URL:              http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
 Source0:          http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
-BuildRequires:    R-devel tex(latex) R-core >= 4.0.0 R-methods R-stats4 R-utils R-stats
-BuildRequires:    R-IRanges-devel >= 2.23.9 R-BiocGenerics >= 0.37.0 R-XVector-devel >= 0.29.2 R-GenomeInfoDb >= 1.15.2 R-S4Vectors-devel >= 0.27.12
+BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
+
+Requires:         R-core >= 3.0.0 R-methods R-IRanges >= 1.11.26
+BuildRequires:    R-devel tex(latex) R >= 3.0.0 R-methods R-IRanges-devel >= 1.11.26
 
 %description
 The ability to efficiently store genomic annotations and alignments is
@@ -36,12 +40,15 @@ rm -f %{buildroot}%{rlibdir}/R.css
 # suggests to have R-BSgenome
 #%%{_bindir}/R CMD check %%{packname}
 
+%clean
+rm -rf %{buildroot}
+
 %files
+%defattr(-, root, root, -)
 %dir %{rlibdir}/%{packname}/
 %doc %{rlibdir}/%{packname}/doc/
 %doc %{rlibdir}/%{packname}/html/
-%doc %{rlibdir}/%{packname}/CITATION
-%{rlibdir}/%{packname}/DESCRIPTION
+%doc %{rlibdir}/%{packname}/DESCRIPTION
 %doc %{rlibdir}/%{packname}/NEWS
 %{rlibdir}/%{packname}/INDEX
 %{rlibdir}/%{packname}/NAMESPACE
@@ -49,116 +56,11 @@ rm -f %{buildroot}%{rlibdir}/R.css
 %{rlibdir}/%{packname}/R/
 %{rlibdir}/%{packname}/extdata/
 %{rlibdir}/%{packname}/help/
-%{rlibdir}/%{packname}/unitTests/
 %{rlibdir}/%{packname}/scripts/
+%{rlibdir}/%{packname}/unitTests/
 %{rlibdir}/%{packname}/libs/
 
 %changelog
-* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 1.48.0-3
-- R-maint-sig mass rebuild
-
-* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.48.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
-
-* Sat Sep  3 2022 Tom Callaway <spot@fedoraproject.org> - 1.48.0-1
-- update to 1.48.0
-- rebuild for R 4.2.1
-
-* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
-
-* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.44.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 1.44.0-1
-- update to 1.44.0
-- Rebuilt for R 4.1.0
-
-* Thu Feb  4 2021 Tom Callaway <spot@fedoraproject.org> - 1.42.0-1
-- update to 1.42.0
-
-* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.40.0-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.40.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Mon Jun  8 2020 Tom Callaway <spot@fedoraproject.org> - 1.40.0-1
-- update to 1.40.0
-- rebuild for R 4
-
-* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.38.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Mon Nov  4 2019 Tom Callaway <spot@fedoraproject.org> - 1.38.0-1
-- update to 1.38.0
-
-* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 1.34.0-3
-- Remove explicit dependencies provided by automatic dependency generator
-
-* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.34.0-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
-
-* Wed Feb  6 2019 Tom Callaway <spot@fedoraproject.org> - 1.34.0-1
-- update to 1.34.0
-
-* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
-
-* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
-
-* Thu May 17 2018 Tom Callaway <spot@fedoraproject.org> - 1.32.3-1
-- update to 1.32.3
-
-* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 1.30.3-1
-- update to 1.30.3
-
-* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
-
-* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
-
-* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
-
-* Tue May 30 2017 Tom Callaway <spot@fedoraproject.org> - 1.28.3-1
-- update to 1.28.3
-
-* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
-
-* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
-
-* Mon Dec  7 2015 Tom Callaway <spot@fedoraproject.org> - 1.22.1-1
-- update to 1.22.1
-
-* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.3-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
-
-* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 1.20.3-1
-- update to 1.20.3
-
-* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.3-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
-
-* Mon Jun  9 2014 Tom Callaway <spot@fedoraproject.org> - 1.16.3-1
-- update to 1.16.3
-
-* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.14.4-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
-
-* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.14.4-1
-- Update to version 1.14.4
-
-* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.4-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
-
 * Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.12.4-1
 - Update to version 1.12.4
 

sources

@@ -1 +1 @@
-SHA512 (GenomicRanges_1.48.0.tar.gz) = 0d7eb77d4bb88731c68944452e9b2926ec125224276aeb668d1f28b384db30521dd11b61c16ba7cbe32e16492bbae0ac94ead98935e59231f53fae5bf0c977e7
+f24ff3dbee92da56fe1742631f2ef0a8  GenomicRanges_1.12.4.tar.gz