- Import the first SRPM from the review

- Change the Require from R to R-core
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pingou 2010-08-17 08:29:20 +02:00
parent 2b45648e2e
commit 7b22b0717e
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GenomicRanges_1.0.7.tar.gz

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R-GenomicRanges.spec Normal file
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%global packname GenomicRanges
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.0.7
Release: 1%{?dist}
Summary: Representation and manipulation of genomic intervals
Group: Applications/Engineering
License: Artistic 2.0
URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R-core >= 2.8.0 R-methods R-IRanges >= 1.5.74
BuildRequires: R-devel tex(latex) R >= 2.8.0 R-methods R-IRanges-devel >= 1.5.74
%description
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%check
# Circular dependencies:
# R-BSgenome depends on R-GenomicRanges which
# suggests to have R-BSgenome
#%%{_bindir}/R CMD check %%{packname}
%clean
rm -rf %{buildroot}
%files
%defattr(-, root, root, -)
%dir %{rlibdir}/%{packname}/
%doc %{rlibdir}/%{packname}/doc/
%doc %{rlibdir}/%{packname}/html/
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/Meta/
%{rlibdir}/%{packname}/R/
%{rlibdir}/%{packname}/help/
%{rlibdir}/%{packname}/scripts/
%{rlibdir}/%{packname}/unitTests/
%{rlibdir}/%{packname}/libs/
%changelog
* Tue Aug 17 2010 pingou <pingou@pingoured.fr> 1.0.7-2
- Change Require from R to R-core
* Thu Jul 29 2010 pingou <pingou@pingoured.fr> 1.0.7-1
- Update to 1.0.7
- End directory by / in %%files
* Mon Jul 19 2010 pingou <pingou@pingoured.fr> 1.0.6-1
- Update to 1.0.6
- End directory by / in %%files
- Change URL
- Fix typo in the comment of check (dependencies)
- Add dependencie to R-IRanges-devel
* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.0.5-1
- initial package for Fedora

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004fd28302ee9e2355a605c476f83f99 GenomicRanges_1.0.7.tar.gz