From 1abedd4e23d43acb3750074d33a04ec81f415d5a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= Date: Tue, 8 Oct 2019 00:57:23 +0200 Subject: [PATCH] Orphaned for 6+ weeks --- .gitignore | 18 ----- R-GenomicRanges.spec | 180 ------------------------------------------- dead.package | 1 + sources | 1 - 4 files changed, 1 insertion(+), 199 deletions(-) delete mode 100644 .gitignore delete mode 100644 R-GenomicRanges.spec create mode 100644 dead.package delete mode 100644 sources diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 0505250..0000000 --- a/.gitignore +++ /dev/null @@ -1,18 +0,0 @@ -GenomicRanges_1.0.7.tar.gz -/GenomicRanges_1.0.9.tar.gz -/GenomicRanges_1.2.0.tar.gz -/GenomicRanges_1.2.2.tar.gz -/GenomicRanges_1.2.3.tar.gz -/GenomicRanges_1.4.6.tar.gz -/GenomicRanges_1.6.2.tar.gz -/GenomicRanges_1.10.5.tar.gz -/GenomicRanges_1.12.1.tar.gz -/GenomicRanges_1.12.4.tar.gz -/GenomicRanges_1.14.4.tar.gz -/GenomicRanges_1.16.3.tar.gz -/GenomicRanges_1.20.3.tar.gz -/GenomicRanges_1.22.1.tar.gz -/GenomicRanges_1.28.3.tar.gz -/GenomicRanges_1.30.3.tar.gz -/GenomicRanges_1.32.3.tar.gz -/GenomicRanges_1.34.0.tar.gz diff --git a/R-GenomicRanges.spec b/R-GenomicRanges.spec deleted file mode 100644 index 6c171a7..0000000 --- a/R-GenomicRanges.spec +++ /dev/null @@ -1,180 +0,0 @@ -%global packname GenomicRanges -%global rlibdir %{_libdir}/R/library - -Name: R-%{packname} -Version: 1.34.0 -Release: 3%{dist} -Summary: Representation and manipulation of genomic intervals -License: Artistic 2.0 -URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html -Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz -BuildRequires: R-devel tex(latex) R >= 3.4.0 R-methods R-stats4 R-utils R-stats -BuildRequires: R-IRanges-devel >= 2.15.12 R-BiocGenerics >= 0.25.3 R-XVector-devel R-GenomeInfoDb >= 1.15.2 R-S4Vectors-devel >= 0.19.11 - -%description -The ability to efficiently store genomic annotations and alignments is -playing a central role when it comes to analyze high-throughput sequencing -data (a.k.a. NGS data). The package defines general purpose containers for -storing genomic intervals as well as more specialized containers for -storing alignments against a reference genome. - -%prep -%setup -q -c -n %{packname} - -%build - -%install -rm -rf %{buildroot} -mkdir -p %{buildroot}%{rlibdir} -%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -rm -f %{buildroot}%{rlibdir}/R.css - -%check -# Circular dependencies: -# R-BSgenome depends on R-GenomicRanges which -# suggests to have R-BSgenome -#%%{_bindir}/R CMD check %%{packname} - -%files -%dir %{rlibdir}/%{packname}/ -%doc %{rlibdir}/%{packname}/doc/ -%doc %{rlibdir}/%{packname}/html/ -%doc %{rlibdir}/%{packname}/CITATION -%{rlibdir}/%{packname}/DESCRIPTION -%doc %{rlibdir}/%{packname}/NEWS -%{rlibdir}/%{packname}/INDEX -%{rlibdir}/%{packname}/NAMESPACE -%{rlibdir}/%{packname}/Meta/ -%{rlibdir}/%{packname}/R/ -%{rlibdir}/%{packname}/extdata/ -%{rlibdir}/%{packname}/help/ -%{rlibdir}/%{packname}/unitTests/ -%{rlibdir}/%{packname}/scripts/ -%{rlibdir}/%{packname}/libs/ - -%changelog -* Mon Aug 12 2019 Elliott Sales de Andrade - 1.34.0-3 -- Remove explicit dependencies provided by automatic dependency generator - -* Wed Jul 24 2019 Fedora Release Engineering - 1.34.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Wed Feb 6 2019 Tom Callaway - 1.34.0-1 -- update to 1.34.0 - -* Thu Jan 31 2019 Fedora Release Engineering - 1.32.3-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Thu Jul 12 2018 Fedora Release Engineering - 1.32.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Thu May 17 2018 Tom Callaway - 1.32.3-1 -- update to 1.32.3 - -* Wed Mar 14 2018 Tom Callaway - 1.30.3-1 -- update to 1.30.3 - -* Wed Feb 07 2018 Fedora Release Engineering - 1.28.3-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Wed Aug 02 2017 Fedora Release Engineering - 1.28.3-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Wed Jul 26 2017 Fedora Release Engineering - 1.28.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Tue May 30 2017 Tom Callaway - 1.28.3-1 -- update to 1.28.3 - -* Fri Feb 10 2017 Fedora Release Engineering - 1.22.1-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Wed Feb 03 2016 Fedora Release Engineering - 1.22.1-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Mon Dec 7 2015 Tom Callaway - 1.22.1-1 -- update to 1.22.1 - -* Tue Jun 16 2015 Fedora Release Engineering - 1.20.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Fri May 29 2015 Tom Callaway - 1.20.3-1 -- update to 1.20.3 - -* Fri Aug 15 2014 Fedora Release Engineering - 1.16.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Mon Jun 9 2014 Tom Callaway - 1.16.3-1 -- update to 1.16.3 - -* Fri Jun 06 2014 Fedora Release Engineering - 1.14.4-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Mon Jan 27 2014 pingou 1.14.4-1 -- Update to version 1.14.4 - -* Fri Aug 02 2013 Fedora Release Engineering - 1.12.4-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild - -* Tue Jul 16 2013 pingou 1.12.4-1 -- Update to version 1.12.4 - -* Sun Apr 07 2013 pingou 1.12.1-1 -- Update to version 1.12.1 - -* Wed Feb 13 2013 Fedora Release Engineering - 1.10.5-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Tue Nov 27 2012 pingou 1.10.5-1 -- Update to version 1.10.5 - -* Wed Jul 18 2012 Fedora Release Engineering - 1.6.2-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild - -* Thu Jan 12 2012 Fedora Release Engineering - 1.6.2-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild - -* Wed Nov 9 2011 Tom Callaway 1.6.2-1 -- update to 1.6.2 - -* Sat Jul 02 2011 pingou 1.4.6-1 -- Update to version 1.4.6 - -* Mon Feb 07 2011 Fedora Release Engineering - 1.2.3-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild - -* Tue Jan 18 2011 pingou 1.2.3-1 -- Update to version 1.2.3 - -* Mon Dec 20 2010 pingou 1.2.2-1 -- Update to version 1.2.2 - -* Thu Nov 25 2010 pingou 1.2.1-1 -- Update to version 1.2.1 - -* Tue Oct 26 2010 pingou 1.2.0-1 -- Update to version 1.2.0 - -* Wed Sep 29 2010 jkeating - 1.0.9-2 -- Rebuilt for gcc bug 634757 - -* Tue Sep 07 2010 pingou 1.0.9-1 -- Update to version 1.0.9 - -* Tue Aug 17 2010 pingou 1.0.7-2 -- Change Require from R to R-core - -* Thu Jul 29 2010 pingou 1.0.7-1 -- Update to 1.0.7 -- End directory by / in %%files - -* Mon Jul 19 2010 pingou 1.0.6-1 -- Update to 1.0.6 -- End directory by / in %%files -- Change URL -- Fix typo in the comment of check (dependencies) -- Add dependencie to R-IRanges-devel - -* Tue Jun 29 2010 pingou 1.0.5-1 -- initial package for Fedora diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..5204a84 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Orphaned for 6+ weeks diff --git a/sources b/sources deleted file mode 100644 index b7cbe36..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -SHA512 (GenomicRanges_1.34.0.tar.gz) = 1e99c0f3aacad331fe1c20756000bc737552687aebde135f3cd59a1e3b7f1e91753c858ee308b97715f2e12bc39aa514498a968f532ef9618dcc711c3e860c83