2010-08-17 06:29:20 +00:00
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%global packname GenomicRanges
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%global rlibdir %{_libdir}/R/library
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Name: R-%{packname}
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2018-05-17 20:15:12 +00:00
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Version: 1.32.3
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2018-07-12 19:17:24 +00:00
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Release: 2%{dist}
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2010-08-17 06:29:20 +00:00
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Summary: Representation and manipulation of genomic intervals
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License: Artistic 2.0
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URL: http://www.bioconductor.org/packages/release/bioc/html/GenomicRanges.html
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Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
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2017-06-02 19:28:03 +00:00
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Requires: R-core >= 3.4.0 R-methods R-stats4 R-utils R-stats
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2018-05-17 20:15:12 +00:00
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Requires: R-IRanges >= 2.14.4 R-BiocGenerics >= 0.25.3 R-XVector R-GenomeInfoDb >= 1.11.5 R-S4Vectors >= 0.17.32
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2017-06-02 19:28:03 +00:00
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BuildRequires: R-devel tex(latex) R >= 3.4.0 R-methods R-stats4 R-utils R-stats
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2018-05-17 20:15:12 +00:00
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BuildRequires: R-IRanges-devel >= 2.14.4 R-BiocGenerics >= 0.25.3 R-XVector-devel R-GenomeInfoDb >= 1.15.2 R-S4Vectors-devel >= 0.17.32
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2010-08-17 06:29:20 +00:00
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%description
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The ability to efficiently store genomic annotations and alignments is
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playing a central role when it comes to analyze high-throughput sequencing
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data (a.k.a. NGS data). The package defines general purpose containers for
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storing genomic intervals as well as more specialized containers for
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storing alignments against a reference genome.
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%prep
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%setup -q -c -n %{packname}
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%build
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%install
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rm -rf %{buildroot}
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mkdir -p %{buildroot}%{rlibdir}
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%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
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test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
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rm -f %{buildroot}%{rlibdir}/R.css
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%check
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# Circular dependencies:
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# R-BSgenome depends on R-GenomicRanges which
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# suggests to have R-BSgenome
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#%%{_bindir}/R CMD check %%{packname}
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%files
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%dir %{rlibdir}/%{packname}/
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%doc %{rlibdir}/%{packname}/doc/
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%doc %{rlibdir}/%{packname}/html/
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2014-06-11 20:08:54 +00:00
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%doc %{rlibdir}/%{packname}/CITATION
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2015-05-30 03:18:24 +00:00
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%{rlibdir}/%{packname}/DESCRIPTION
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2011-11-10 18:32:45 +00:00
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%doc %{rlibdir}/%{packname}/NEWS
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2010-08-17 06:29:20 +00:00
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%{rlibdir}/%{packname}/INDEX
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%{rlibdir}/%{packname}/NAMESPACE
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%{rlibdir}/%{packname}/Meta/
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%{rlibdir}/%{packname}/R/
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2011-11-10 18:32:45 +00:00
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%{rlibdir}/%{packname}/extdata/
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2010-08-17 06:29:20 +00:00
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%{rlibdir}/%{packname}/help/
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%{rlibdir}/%{packname}/unitTests/
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2015-05-30 03:18:24 +00:00
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%{rlibdir}/%{packname}/scripts/
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2010-08-17 06:29:20 +00:00
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%{rlibdir}/%{packname}/libs/
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%changelog
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2018-07-12 19:17:24 +00:00
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* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.32.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
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2018-05-17 20:15:12 +00:00
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* Thu May 17 2018 Tom Callaway <spot@fedoraproject.org> - 1.32.3-1
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- update to 1.32.3
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2018-03-15 14:40:37 +00:00
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* Wed Mar 14 2018 Tom Callaway <spot@fedoraproject.org> - 1.30.3-1
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- update to 1.30.3
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2018-02-07 01:06:48 +00:00
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* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
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2017-08-02 17:08:53 +00:00
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* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
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2017-07-26 02:08:36 +00:00
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* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.28.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
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2017-06-02 19:28:03 +00:00
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* Tue May 30 2017 Tom Callaway <spot@fedoraproject.org> - 1.28.3-1
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- update to 1.28.3
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2017-02-10 05:23:59 +00:00
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* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
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2016-02-03 15:40:31 +00:00
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* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.22.1-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
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2015-12-07 19:00:22 +00:00
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* Mon Dec 7 2015 Tom Callaway <spot@fedoraproject.org> - 1.22.1-1
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- update to 1.22.1
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2015-06-16 23:10:58 +00:00
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* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.20.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
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2015-05-30 03:18:24 +00:00
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* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 1.20.3-1
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- update to 1.20.3
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2014-08-15 19:13:16 +00:00
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* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.16.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
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2014-06-11 20:08:54 +00:00
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* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 1.16.3-1
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- update to 1.16.3
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2014-06-06 23:16:32 +00:00
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* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.14.4-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
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2014-01-27 17:14:10 +00:00
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* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 1.14.4-1
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- Update to version 1.14.4
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2013-08-02 23:24:33 +00:00
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* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.12.4-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
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2013-07-16 18:36:58 +00:00
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* Tue Jul 16 2013 pingou <pingou@pingoured.fr> 1.12.4-1
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- Update to version 1.12.4
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2013-04-07 09:46:27 +00:00
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* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 1.12.1-1
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- Update to version 1.12.1
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2013-02-13 15:39:12 +00:00
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* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.10.5-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
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2012-11-27 18:06:23 +00:00
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* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 1.10.5-1
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- Update to version 1.10.5
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2012-07-18 14:49:24 +00:00
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* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
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2012-01-12 20:38:03 +00:00
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* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.6.2-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
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2011-11-09 19:41:36 +00:00
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* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 1.6.2-1
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- update to 1.6.2
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2011-07-02 12:06:10 +00:00
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* Sat Jul 02 2011 pingou <pingou@pingoured.fr> 1.4.6-1
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- Update to version 1.4.6
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2011-02-08 00:39:24 +00:00
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* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.2.3-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
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2011-01-18 15:21:42 +00:00
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* Tue Jan 18 2011 pingou <pingou@pingoured.fr> 1.2.3-1
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- Update to version 1.2.3
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2010-12-20 08:33:07 +00:00
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* Mon Dec 20 2010 pingou <pingou@pingoured.fr> 1.2.2-1
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- Update to version 1.2.2
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2010-11-25 08:04:34 +00:00
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* Thu Nov 25 2010 pingou <pingou@pingoured.fr> 1.2.1-1
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- Update to version 1.2.1
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2010-10-26 09:10:30 +00:00
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* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 1.2.0-1
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- Update to version 1.2.0
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2010-09-29 22:14:36 +00:00
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* Wed Sep 29 2010 jkeating - 1.0.9-2
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- Rebuilt for gcc bug 634757
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2010-09-07 08:18:21 +00:00
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* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 1.0.9-1
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- Update to version 1.0.9
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2010-08-17 06:29:20 +00:00
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* Tue Aug 17 2010 pingou <pingou@pingoured.fr> 1.0.7-2
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- Change Require from R to R-core
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* Thu Jul 29 2010 pingou <pingou@pingoured.fr> 1.0.7-1
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- Update to 1.0.7
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- End directory by / in %%files
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* Mon Jul 19 2010 pingou <pingou@pingoured.fr> 1.0.6-1
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- Update to 1.0.6
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- End directory by / in %%files
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- Change URL
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- Fix typo in the comment of check (dependencies)
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- Add dependencie to R-IRanges-devel
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* Tue Jun 29 2010 pingou <pingou@pingoured.fr> 1.0.5-1
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- initial package for Fedora
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