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.cvsignore → .gitignore
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.cvsignore → .gitignore
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21
Makefile
21
Makefile
@ -1,21 +0,0 @@
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# Makefile for source rpm: R-BufferedMatrix
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# $Id$
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NAME := R-BufferedMatrix
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SPECFILE = $(firstword $(wildcard *.spec))
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define find-makefile-common
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for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
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endef
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MAKEFILE_COMMON := $(shell $(find-makefile-common))
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ifeq ($(MAKEFILE_COMMON),)
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# attept a checkout
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define checkout-makefile-common
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test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
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endef
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MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
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endif
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include $(MAKEFILE_COMMON)
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@ -1,24 +1,26 @@
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%define packname BufferedMatrix
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%global packname BufferedMatrix
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%define bioc 2.2
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%global bioc 2.5
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%global Rvers 2.10.0
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Name: R-%{packname}
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Name: R-%{packname}
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Version: 1.4.0
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Version: 1.10.0
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Release: 1%{?dist}
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Release: 1%{?dist}
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Summary: A matrix data storage object method from bioconductor
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Summary: A matrix data storage object method from bioconductor
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Summary(fr): Stockage des données d'un matrice dans un fichier temporaire
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Summary(fr): Stockage des données d'un matrice dans un fichier temporaire
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Group: Applications/Engineering
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Group: Applications/Engineering
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License: LGPLv2+
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License: LGPLv2+
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URL: http://bioconductor.org/packages/2.2/bioc/html/BufferedMatrix.html
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URL: http://bioconductor.org/packages/release/bioc/html/BufferedMatrix.html
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Source0: http://bioconductor.org/packages/%{bioc}/bioc/src/contrib/%{packname}_%{version}.tar.gz
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Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: R-devel tetex-latex
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BuildRequires: R-devel >= %{Rvers} tetex-latex
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Requires(post): R
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Requires: R >= %{Rvers}
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Requires(post): R
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Requires(postun): R
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Requires(postun): R
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%package devel
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%package devel
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Summary: Development files for %{name}
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Summary: Development files for %{name}
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Group: Development/Libraries
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Group: Development/Libraries
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Requires: %{name} = %{version}
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Requires: %{name} = %{version}
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@ -43,20 +45,23 @@ developing applications that use %{name}
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%build
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%build
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%install
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%install
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rm -rf %{buildroot}
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rm -rf %{buildroot}i
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sed -i -e 's/\r$//' %{packname}/inst/doc/BufferedMatrix.Rnw
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sed -i -e 's/\r$//' %{packname}/inst/doc/BufferedMatrix.Rnw
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mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/
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install -D %{packname}/inst/include/* $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/
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chmod -x $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/*
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mkdir -p %{buildroot}%{_libdir}/R/library
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mkdir -p %{buildroot}%{_libdir}/R/library
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R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
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%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
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# Clean up in advance of check
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test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
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test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
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rm -rf %{buildroot}%{_libdir}/R/library/R.css
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rm -rf %{buildroot}%{_libdir}/R/library/R.css
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rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/include/
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## Change the header of place for the -devel --> Removed
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## see: https://www.redhat.com/archives/fedora-r-devel-list/2009-March/msg00001.html
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#mkdir -p $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/
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#install -D %{packname}/inst/include/* $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/
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#chmod -x $RPM_BUILD_ROOT%{_datadir}/R/library/%{packname}/include/*
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#rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/include/
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%check
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%check
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%{_bindir}/R CMD check %{packname}
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%{_bindir}/R CMD check %{packname}
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@ -64,35 +69,50 @@ rm -rf %{buildroot}%{_libdir}/R/library/%{packname}/include/
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%clean
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%clean
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rm -rf %{buildroot}
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rm -rf %{buildroot}
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%post
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%{_R_make_search_index}
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%postun
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%{_R_make_search_index}
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%files
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%files
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%defattr(-, root, root, -)
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%defattr(-, root, root, -)
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%dir %{_libdir}/R/library/%{packname}
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%dir %{_libdir}/R/library/%{packname}
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%{_libdir}/R/library/%{packname}/CONTENTS
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%{_libdir}/R/library/%{packname}/INDEX
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%{_libdir}/R/library/%{packname}/INDEX
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%{_libdir}/R/library/%{packname}/Meta/
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%{_libdir}/R/library/%{packname}/Meta/
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%{_libdir}/R/library/%{packname}/R-ex/
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%{_libdir}/R/library/%{packname}/R/
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%{_libdir}/R/library/%{packname}/R/
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%{_libdir}/R/library/%{packname}/help/
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%{_libdir}/R/library/%{packname}/help/
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%{_libdir}/R/library/%{packname}/libs/
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%{_libdir}/R/library/%{packname}/libs/
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%{_libdir}/R/library/%{packname}/NAMESPACE
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%{_libdir}/R/library/%{packname}/NAMESPACE
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%doc %{_libdir}/R/library/%{packname}/man/
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%doc %{_libdir}/R/library/%{packname}/latex/
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%doc %{_libdir}/R/library/%{packname}/doc
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%doc %{_libdir}/R/library/%{packname}/doc
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%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
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%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
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%doc %{_libdir}/R/library/%{packname}/html
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%doc %{_libdir}/R/library/%{packname}/html
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%files devel
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%files devel
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%defattr(-,root,root,-)
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%defattr(-,root,root,-)
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%{_datadir}/R/library/%{packname}/include/
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%{_libdir}/R/library/%{packname}/include/
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%changelog
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%changelog
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* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 1.10.0-1
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- Update to 1.10.0
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- Remove %%post and %%postun
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- Adapt %%files to R-2.10.0
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* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.8.0-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
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* Tue Apr 28 2009 pingou <pingou@pingoured.fr> 1.8.0-1
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- Update to Bioconductor 2.4 and R-2.9.0
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* Sun Mar 22 2009 pingou <pingou@pingoured.fr> - 1.6.0-2
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- -devel should contain only the folder include !
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* Sat Mar 21 2009 pingou <pingou@pingoured.fr> - 1.6.0-1
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- Update to Biocondutor 2.3
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- Put back the headers to libdir instead of moving them to datadir
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* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.0-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
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* Mon Dec 01 2008 Pingou <pingoufc4@yahoo.fr> 1.4.0-2
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- Change own directory -- #473617
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* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.4.0-1
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* Fri May 02 2008 Pingou <pingoufc4@yahoo.fr> 1.4.0-1
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- Update to bioconductor 2.2
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- Update to bioconductor 2.2
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