fslpy
2.3.1
fslpy
fsl
Contributing to
fslpy
fslpy
release history
fslpy
Docs
»
Index
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
A
abs() (fsl.wrappers.fslmaths.fslmaths method)
add() (fsl.wrappers.fslmaths.fslmaths method)
addAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
addComponent() (fsl.data.volumelabels.VolumeLabels method)
addExt() (in module fsl.data.image)
(in module fsl.utils.path)
addLabel() (fsl.data.volumelabels.VolumeLabels method)
addVertexData() (fsl.data.mesh.Mesh method)
addVertices() (fsl.data.mesh.Mesh method)
adjustCoverage() (in module fsl.data.imagewrapper)
all_variables() (fsl.utils.filetree.filetree.FileTree property)
allFiles() (in module fsl.utils.path)
ALLOWED_EXTENSIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
allVariables() (in module fsl.utils.filetree.query)
applyArgStyle() (in module fsl.wrappers.wrapperutils)
applySmoothing() (in module fsl.utils.image.resample)
applytopup() (in module fsl.wrappers.eddy)
applywarp() (in module fsl.wrappers.fnirt)
applyxfm() (in module fsl.wrappers.flirt)
asImage() (fsl.data.bitmap.Bitmap method)
assertFileExists() (in module fsl.utils.assertions)
assertIsFuncGifti() (in module fsl.utils.assertions)
assertIsMelodicDir() (in module fsl.utils.assertions)
assertIsNifti() (in module fsl.utils.assertions)
assertIsNifti3D() (in module fsl.utils.assertions)
assertIsNifti4D() (in module fsl.utils.assertions)
assertIsSurfGifti() (in module fsl.utils.assertions)
assertNiftiShape() (in module fsl.utils.assertions)
Atlas (class in fsl.data.atlases)
Atlas() (in module fsl.utils.parse_data)
AtlasDescription (class in fsl.data.atlases)
AtlasLabel (class in fsl.data.atlases)
atlasOrDesc() (in module fsl.scripts.atlasq)
atlasquery_emulation() (in module fsl.scripts.atlasq)
AtlasRegistry (class in fsl.data.atlases)
axes() (fsl.utils.filetree.query.FileTreeQuery method)
axisAnglesToRotMat() (in module fsl.utils.transform)
axisBounds() (in module fsl.utils.transform)
axisMapping() (fsl.data.image.Nifti method)
B
BasisFunctionEV (class in fsl.data.featdesign)
bet() (in module fsl.wrappers.bet)
bin() (fsl.wrappers.fslmaths.fslmaths method)
binv() (fsl.wrappers.fslmaths.fslmaths method)
Bitmap (class in fsl.data.bitmap)
BITMAP_DESCRIPTIONS (in module fsl.data.bitmap)
BITMAP_EXTENSIONS (in module fsl.data.bitmap)
block() (in module fsl.utils.idle)
bounds() (fsl.data.mesh.Mesh property)
bptf() (fsl.wrappers.fslmaths.fslmaths method)
C
Cache (class in fsl.utils.cache)
CacheItem (class in fsl.utils.cache)
calcExpansion() (in module fsl.data.imagewrapper)
calcFaceNormals() (in module fsl.data.mesh)
calcRange() (fsl.data.image.Image method)
calculateMatrix() (in module fsl.utils.image.resample)
calcVertexNormals() (in module fsl.data.mesh)
cancelIdle() (in module fsl.utils.idle)
canHaveGui() (fsl.utils.platform.Platform property)
canonicalShape() (in module fsl.data.image)
canonicalSliceObj() (in module fsl.data.imagewrapper)
check_forbidden_characters() (in module fsl.utils.filetree.parse)
clear() (fsl.data.volumelabels.VolumeLabels method)
(fsl.utils.cache.Cache method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
clearComponents() (fsl.data.volumelabels.VolumeLabels method)
clearLabels() (fsl.data.volumelabels.VolumeLabels method)
clearVertexData() (fsl.data.mesh.Mesh method)
cluster() (in module fsl.wrappers.misc)
clusterResults() (fsl.data.featimage.FEATImage method)
cmdwrapper() (in module fsl.wrappers.wrapperutils)
collapseExpansions() (in module fsl.data.imagewrapper)
commonBase() (in module fsl.utils.path)
compareVersions() (in module fsl.version)
componentsToEigendecomposition() (in module fsl.data.dtifit)
componentsToTensor() (in module fsl.data.dtifit)
compose() (in module fsl.utils.transform)
concat() (in module fsl.utils.transform)
concatxfm() (in module fsl.wrappers.flirt)
configDir() (fsl.utils.settings.Settings property)
configID() (fsl.utils.settings.Settings property)
ConfoundEV (class in fsl.data.featdesign)
contrastNames() (fsl.data.featimage.FEATImage method)
contrasts() (fsl.data.featimage.FEATImage method)
convertwarp() (in module fsl.wrappers.fnirt)
coordLabel() (fsl.data.atlases.LabelAtlas method)
coordProportions() (fsl.data.atlases.ProbabilisticAtlas method)
coordQuery() (in module fsl.scripts.atlasq)
CORE_GEOMETRY_DESCRIPTIONS (in module fsl.data.freesurfer)
CORE_GEOMETRY_FILES (in module fsl.data.freesurfer)
coverage() (fsl.data.imagewrapper.ImageWrapper method)
covered() (fsl.data.imagewrapper.ImageWrapper property)
createLock (fsl.utils.idle.MutexFactory attribute)
D
data() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Image property)
dataRange() (fsl.data.image.Image property)
(fsl.data.imagewrapper.ImageWrapper property)
dataSource() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Image property)
(fsl.data.mesh.Mesh property)
decompose() (in module fsl.utils.transform)
decomposeTensorMatrix() (in module fsl.data.dtifit)
deepest() (in module fsl.utils.path)
DEFAULT_TOPIC (in module fsl.utils.notifier)
defaultExt() (in module fsl.data.image)
defines() (fsl.utils.filetree.filetree.FileTree method)
delete() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deleteFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deprecated() (in module fsl.utils.deprecated)
dequeue() (fsl.utils.idle.TaskThread method)
deregister() (fsl.utils.notifier.Notifier method)
dicomDir() (fsl.data.dicom.DicomImage property)
DicomImage (class in fsl.data.dicom)
dilF() (fsl.wrappers.fslmaths.fslmaths method)
dilM() (fsl.wrappers.fslmaths.fslmaths method)
disable() (fsl.utils.notifier.Notifier method)
disableAll() (fsl.utils.notifier.Notifier method)
disabled() (in module fsl.utils.assertions)
div() (fsl.wrappers.fslmaths.fslmaths method)
DRY_RUN (in module fsl.utils.run)
dryrun() (in module fsl.utils.run)
DTIFitTensor (class in fsl.data.dtifit)
dtype() (fsl.data.image.Image property)
E
eddy_cuda() (in module fsl.wrappers.eddy)
eigendecompositionToComponents() (in module fsl.data.dtifit)
eigendecompositionToTensor() (in module fsl.data.dtifit)
enable() (fsl.utils.notifier.Notifier method)
enableAll() (fsl.utils.notifier.Notifier method)
enqueue() (fsl.utils.idle.TaskThread method)
ensureIsImage() (in module fsl.utils.ensure)
ero() (fsl.wrappers.fslmaths.fslmaths method)
EV (class in fsl.data.featdesign)
evNames() (fsl.data.featimage.FEATImage method)
exists() (fsl.utils.filetree.filetree.FileTree method)
expectedShape() (in module fsl.data.imagewrapper)
Expired
EXTENSION_DESCRIPTIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
EXTRA_GEOMETRY_FILES (in module fsl.data.freesurfer)
extract_variables() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
F
fast() (in module fsl.wrappers.fast)
FEATFSFDesign (class in fsl.data.featdesign)
FEATImage (class in fsl.data.featimage)
FILE_GROUPS (in module fsl.data.image)
filename() (fsl.data.featdesign.VoxelwiseEVMixin property)
(fsl.utils.filetree.query.Match property)
fileOrArray() (in module fsl.wrappers.wrapperutils)
fileOrImage() (in module fsl.wrappers.wrapperutils)
fileOrText() (in module fsl.wrappers.wrapperutils)
filePath() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
FileTree (class in fsl.utils.filetree.filetree)
FileTreeQuery (class in fsl.utils.filetree.query)
fill_known() (in module fsl.utils.filetree.utils)
fillh() (fsl.wrappers.fslmaths.fslmaths method)
find() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
find_variables() (in module fsl.utils.filetree.utils)
findReferenceImage() (in module fsl.data.freesurfer)
(in module fsl.data.vtk)
fit() (fsl.data.featimage.FEATImage method)
fixExt() (in module fsl.data.image)
flirt() (in module fsl.wrappers.flirt)
flirtMatrixToSform() (in module fsl.utils.transform)
fnirt() (in module fsl.wrappers.fnirt)
FreesurferMesh (class in fsl.data.freesurfer)
frozen() (fsl.utils.platform.Platform property)
FSFError
fsl (module)
fsl.data (module)
fsl.data.atlases (module)
fsl.data.bitmap (module)
fsl.data.constants (module)
fsl.data.dicom (module)
fsl.data.dtifit (module)
fsl.data.featanalysis (module)
fsl.data.featdesign (module)
fsl.data.featimage (module)
fsl.data.fixlabels (module)
fsl.data.freesurfer (module)
fsl.data.gifti (module)
fsl.data.image (module)
fsl.data.imagewrapper (module)
fsl.data.melodicanalysis (module)
fsl.data.melodicimage (module)
fsl.data.mesh (module)
fsl.data.mghimage (module)
fsl.data.utils (module)
fsl.data.vest (module)
fsl.data.volumelabels (module)
fsl.data.vtk (module)
fsl.scripts (module)
fsl.scripts.atlasq (module)
fsl.scripts.fsl_ents (module)
fsl.scripts.imcp (module)
fsl.scripts.imglob (module)
fsl.scripts.immv (module)
fsl.scripts.resample_image (module)
fsl.utils (module)
fsl.utils.assertions (module)
fsl.utils.cache (module)
fsl.utils.deprecated (module)
fsl.utils.ensure (module)
fsl.utils.filetree (module)
fsl.utils.filetree.filetree (module)
fsl.utils.filetree.parse (module)
fsl.utils.filetree.query (module)
fsl.utils.filetree.utils (module)
fsl.utils.fslsub (module)
fsl.utils.idle (module)
fsl.utils.image (module)
fsl.utils.image.resample (module)
fsl.utils.imcp (module)
fsl.utils.memoize (module)
fsl.utils.meta (module)
fsl.utils.naninfrange (module)
fsl.utils.notifier (module)
fsl.utils.parse_data (module)
fsl.utils.path (module)
fsl.utils.platform (module)
fsl.utils.run (module)
fsl.utils.settings (module)
fsl.utils.tempdir (module)
fsl.utils.transform (module)
fsl.utils.weakfuncref (module)
fsl.version (module)
fsl.wrappers (module)
fsl.wrappers.bet (module)
fsl.wrappers.eddy (module)
fsl.wrappers.fast (module)
fsl.wrappers.flirt (module)
fsl.wrappers.fnirt (module)
fsl.wrappers.fsl_anat (module)
fsl.wrappers.fslmaths (module)
fsl.wrappers.fugue (module)
fsl.wrappers.melodic (module)
fsl.wrappers.misc (module)
fsl.wrappers.wrapperutils (module)
fsl_anat() (in module fsl.wrappers.fsl_anat)
FSL_PREFIX (in module fsl.utils.run)
fsl_regfilt() (in module fsl.wrappers.melodic)
fsldevdir() (fsl.utils.platform.Platform property)
fsldir() (fsl.utils.platform.Platform property)
fslmaths (class in fsl.wrappers.fslmaths)
FSLNotPresent
fslreorient2std() (in module fsl.wrappers.misc)
fslroi() (in module fsl.wrappers.misc)
fslVersion() (fsl.utils.platform.Platform property)
fslwrapper() (in module fsl.wrappers.wrapperutils)
fugue() (in module fsl.wrappers.fugue)
func_to_cmd() (in module fsl.utils.fslsub)
function() (fsl.utils.weakfuncref.WeakFunctionRef method)
G
genComponentIndexList() (in module fsl.scripts.fsl_ents)
get() (fsl.data.atlases.LabelAtlas method)
(fsl.data.atlases.ProbabilisticAtlas method)
(fsl.utils.cache.Cache method)
(fsl.utils.filetree.filetree.FileTree method)
get_all() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
get_all_trees() (fsl.utils.filetree.filetree.FileTree method)
get_all_vars() (fsl.utils.filetree.filetree.FileTree method)
get_registered() (in module fsl.utils.filetree.filetree)
get_template() (fsl.utils.filetree.filetree.FileTree method)
get_variable() (fsl.utils.filetree.filetree.FileTree method)
getAllLabels() (fsl.data.volumelabels.VolumeLabels method)
getAnalysisDir() (in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getAnalysisName() (fsl.data.featimage.FEATImage method)
getAtlasDescription() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
getClusterMask() (fsl.data.featimage.FEATImage method)
getClusterMaskFile() (in module fsl.data.featanalysis)
getComponentPowerSpectra() (in module fsl.data.melodicanalysis)
getComponentPowerSpectrum() (fsl.data.melodicimage.MelodicImage method)
getComponents() (fsl.data.volumelabels.VolumeLabels method)
getComponentTimeSeries() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getCOPE() (fsl.data.featimage.FEATImage method)
getCOPEFile() (in module fsl.data.featanalysis)
getData() (fsl.data.featdesign.VoxelwiseEVMixin method)
getDataFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getDesign() (fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featimage.FEATImage method)
getDisplayLabel() (fsl.data.volumelabels.VolumeLabels method)
getDTIFitDataPrefix() (in module fsl.data.dtifit)
getEVs() (fsl.data.featdesign.FEATFSFDesign method)
getExt() (in module fsl.data.image)
(in module fsl.utils.path)
getFEATDir() (fsl.data.featimage.FEATImage method)
getFileGroup() (in module fsl.utils.path)
getFirstLevelEVs() (in module fsl.data.featdesign)
getFIRSTPrefix() (in module fsl.data.vtk)
getFTMixFile() (in module fsl.data.melodicanalysis)
getHigherLevelEVs() (in module fsl.data.featdesign)
getICFile() (in module fsl.data.melodicanalysis)
getIdleTimeout() (in module fsl.utils.idle)
getImageWrapper() (fsl.data.image.Image method)
getLabels() (fsl.data.volumelabels.VolumeLabels method)
getMeanFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getMelodicDir() (fsl.data.melodicimage.MelodicImage method)
getMelodicFile() (in module fsl.data.featanalysis)
getMeta() (fsl.utils.meta.Meta method)
getMixFile() (in module fsl.data.melodicanalysis)
getNumComponents() (in module fsl.data.melodicanalysis)
getOrientation() (fsl.data.image.Nifti method)
getPE() (fsl.data.featimage.FEATImage method)
getPEFile() (in module fsl.data.featanalysis)
getReportFile() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getResidualFile() (in module fsl.data.featanalysis)
getResiduals() (fsl.data.featimage.FEATImage method)
getTaskThread() (fsl.data.imagewrapper.ImageWrapper method)
getThresholds() (in module fsl.data.featanalysis)
getTopLevelAnalysisDir() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getVertexData() (fsl.data.mesh.Mesh method)
getVertexDataColourTable() (fsl.data.freesurfer.FreesurferMesh method)
getXFormCode() (fsl.data.image.Nifti method)
getZStatFile() (in module fsl.data.featanalysis)
getZStats() (fsl.data.featimage.FEATImage method)
GiftiMesh (class in fsl.data.gifti)
glIsSoftwareRenderer() (fsl.utils.platform.Platform property)
glRenderer() (fsl.utils.platform.Platform property)
glVersion() (fsl.utils.platform.Platform property)
guessType() (in module fsl.data.utils)
H
hasAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
hasComponent() (fsl.data.volumelabels.VolumeLabels method)
hasExt() (in module fsl.utils.path)
hasLabel() (fsl.data.volumelabels.VolumeLabels method)
hasMelodicDir() (in module fsl.data.featanalysis)
hasStats() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
haveGui() (fsl.utils.platform.Platform property)
HelpFormatter (class in fsl.scripts.atlasq)
HIDE_IF_TRUE (in module fsl.wrappers.wrapperutils)
I
identifyAtlas() (in module fsl.scripts.atlasq)
IdentifyError
idle() (in module fsl.utils.idle)
idleReset() (in module fsl.utils.idle)
IdleTask (class in fsl.utils.idle)
idleWhen() (in module fsl.utils.idle)
Image (class in fsl.data.image)
image() (fsl.data.featdesign.VoxelwiseEVMixin property)
Image() (in module fsl.utils.parse_data)
ImageOut() (in module fsl.utils.parse_data)
ImageWrapper (class in fsl.data.imagewrapper)
imcp() (in module fsl.utils.imcp)
imglob() (in module fsl.scripts.imglob)
immv() (in module fsl.utils.imcp)
indices() (fsl.data.mesh.Mesh property)
info() (in module fsl.utils.fslsub)
inIdle() (in module fsl.utils.idle)
initialise() (in module fsl.utils.settings)
inm() (fsl.wrappers.fslmaths.fslmaths method)
inSSHSession() (fsl.utils.platform.Platform property)
Instanceify (class in fsl.utils.memoize)
intent() (fsl.data.image.Nifti property)
invalidate() (fsl.utils.memoize.Memoize method)
InvalidLabelFileError
invert() (in module fsl.utils.transform)
inVNCSession() (fsl.utils.platform.Platform property)
invwarp() (in module fsl.wrappers.fnirt)
invxfm() (in module fsl.wrappers.flirt)
isAllEnabled() (fsl.utils.notifier.Notifier method)
isDTIFitPath() (in module fsl.data.dtifit)
isEnabled() (fsl.utils.notifier.Notifier method)
isFEATDir() (in module fsl.data.featanalysis)
isFEATImage() (in module fsl.data.featanalysis)
isFirstLevelAnalysis() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
isMelodicDir() (in module fsl.data.melodicanalysis)
isMelodicImage() (in module fsl.data.melodicanalysis)
isNeurological() (fsl.data.image.Nifti method)
isNoisyComponent() (in module fsl.data.fixlabels)
isQueued() (fsl.utils.idle.TaskThread method)
isValidFancySliceObj() (in module fsl.data.imagewrapper)
L
L1() (fsl.data.dtifit.DTIFitTensor method)
L2() (fsl.data.dtifit.DTIFitTensor method)
L3() (fsl.data.dtifit.DTIFitTensor method)
label() (fsl.data.atlases.LabelAtlas method)
LabelAtlas (class in fsl.data.atlases)
labelNames() (in module fsl.scripts.atlasq)
list_all_trees() (in module fsl.utils.filetree.parse)
listAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
(in module fsl.scripts.atlasq)
listFiles() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
LOAD (in module fsl.wrappers.wrapperutils)
load() (fsl.data.volumelabels.VolumeLabels method)
load_pickle() (fsl.utils.filetree.filetree.FileTree class method)
loadAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
loadClusterResults() (in module fsl.data.featanalysis)
loadConfoundFiles() (in module fsl.scripts.fsl_ents)
loadContrasts() (in module fsl.data.featanalysis)
loadData() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
loadDesign() (in module fsl.data.featanalysis)
loadDesignMat() (in module fsl.data.featdesign)
loadGiftiMesh() (in module fsl.data.gifti)
loadGiftiVertexData() (in module fsl.data.gifti)
loadIndexedImageFile() (in module fsl.data.image)
loadLabelFile() (in module fsl.data.fixlabels)
loadSeries() (in module fsl.data.dicom)
loadSettings() (in module fsl.data.featanalysis)
loadVertexData() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVertexDataFile() (in module fsl.data.freesurfer)
loadVertices() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVestLutFile() (in module fsl.data.vest)
loadVTKPolydataFile() (in module fsl.data.vtk)
looksLikeImage() (in module fsl.data.image)
looksLikeTensorImage() (in module fsl.data.dtifit)
looksLikeVestLutFile() (in module fsl.data.vest)
M
main() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.imcp)
(in module fsl.scripts.imglob)
(in module fsl.scripts.immv)
(in module fsl.scripts.resample_image)
makeWriteable() (in module fsl.data.utils)
mapIndices() (fsl.data.image.Nifti method)
mas() (fsl.wrappers.fslmaths.fslmaths method)
MaskError
maskLabel() (fsl.data.atlases.LabelAtlas method)
maskProportions() (fsl.data.atlases.ProbabilisticAtlas method)
maskQuery() (in module fsl.scripts.atlasq)
Match (class in fsl.utils.filetree.query)
mcflirt() (in module fsl.wrappers.flirt)
melodic() (in module fsl.wrappers.melodic)
MelodicImage (class in fsl.data.melodicimage)
Memoize (class in fsl.utils.memoize)
memoize() (in module fsl.utils.memoize)
memoizeMD5() (in module fsl.utils.memoize)
Mesh (class in fsl.data.mesh)
Mesh() (in module fsl.utils.parse_data)
Meta (class in fsl.utils.meta)
metaItems() (fsl.utils.meta.Meta method)
metaKeys() (fsl.utils.meta.Meta method)
metaValues() (fsl.utils.meta.Meta method)
MGHImage (class in fsl.data.mghimage)
mghImageFile() (fsl.data.mghimage.MGHImage property)
MIN_DCM2NIIX_VERSION (in module fsl.data.dicom)
MissingVariable
modelFit() (in module fsl.data.featimage)
MotionParameterEV (class in fsl.data.featdesign)
mul() (fsl.wrappers.fslmaths.fslmaths method)
mutex() (in module fsl.utils.idle)
MutexFactory (class in fsl.utils.idle)
N
name() (fsl.data.bitmap.Bitmap property)
(fsl.data.mesh.Mesh property)
namedPositionals() (in module fsl.wrappers.wrapperutils)
naninfrange() (in module fsl.utils.naninfrange)
ndim() (fsl.data.image.Nifti property)
nearestVertex() (fsl.data.mesh.Mesh method)
needsFixing() (in module fsl.data.mesh)
nibImage() (fsl.data.image.Image property)
Nifti (class in fsl.data.image)
NIFTI_XFORM_ALIGNED_ANAT (in module fsl.data.constants)
NIFTI_XFORM_ANALYZE (in module fsl.data.constants)
NIFTI_XFORM_MNI_152 (in module fsl.data.constants)
NIFTI_XFORM_SCANNER_ANAT (in module fsl.data.constants)
NIFTI_XFORM_TALAIRACH (in module fsl.data.constants)
NIFTI_XFORM_UNKNOWN (in module fsl.data.constants)
niftiVersion() (fsl.data.image.Nifti property)
NormalEV (class in fsl.data.featdesign)
normalise() (in module fsl.utils.transform)
normals() (fsl.data.mesh.Mesh property)
Notifier (class in fsl.utils.notifier)
notify() (fsl.utils.notifier.Notifier method)
numComponents() (fsl.data.melodicimage.MelodicImage method)
(fsl.data.volumelabels.VolumeLabels method)
numContrasts() (fsl.data.featimage.FEATImage method)
numEVs() (fsl.data.featimage.FEATImage method)
numPoints() (fsl.data.featimage.FEATImage method)
nvals() (fsl.data.image.Image property)
nvertices() (fsl.data.mesh.Mesh property)
O
ohi() (in module fsl.scripts.atlasq)
on_disk() (fsl.utils.filetree.filetree.FileTree method)
optional_variables() (in module fsl.utils.filetree.utils)
ORIENT_A2P (in module fsl.data.constants)
ORIENT_I2S (in module fsl.data.constants)
ORIENT_L2R (in module fsl.data.constants)
ORIENT_P2A (in module fsl.data.constants)
ORIENT_R2L (in module fsl.data.constants)
ORIENT_S2I (in module fsl.data.constants)
ORIENT_UNKNOWN (in module fsl.data.constants)
os() (fsl.utils.platform.Platform property)
output() (in module fsl.utils.fslsub)
OVERLAP_ALL (in module fsl.data.imagewrapper)
OVERLAP_NONE (in module fsl.data.imagewrapper)
OVERLAP_SOME (in module fsl.data.imagewrapper)
P
parent() (fsl.utils.filetree.filetree.FileTree property)
parseArgs() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.resample_image)
parseVersionString() (in module fsl.version)
partialFit() (fsl.data.featimage.FEATImage method)
patchVersion() (in module fsl.version)
PathError
,
[1]
pixdim() (fsl.data.image.Nifti property)
planeIntersection() (fsl.data.mesh.Mesh method)
Platform (class in fsl.utils.platform)
platform (in module fsl.utils.platform)
prepareGiftiVertexData() (in module fsl.data.gifti)
prepareMask() (fsl.data.atlases.Atlas method)
printColumns() (in module fsl.scripts.atlasq)
ProbabilisticAtlas (class in fsl.data.atlases)
proportions() (fsl.data.atlases.ProbabilisticAtlas method)
put() (fsl.utils.cache.Cache method)
Q
query() (fsl.utils.filetree.query.FileTreeQuery method)
queryAtlas() (in module fsl.scripts.atlasq)
queryLongOutput() (in module fsl.scripts.atlasq)
queryShortOutput() (in module fsl.scripts.atlasq)
R
rayIntersection() (fsl.data.mesh.Mesh method)
read() (fsl.utils.filetree.filetree.FileTree class method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
read_line() (in module fsl.utils.filetree.parse)
read_subtree_line() (in module fsl.utils.filetree.parse)
readAll() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
recip() (fsl.wrappers.fslmaths.fslmaths method)
register() (fsl.utils.notifier.Notifier method)
register_tree() (in module fsl.utils.filetree.filetree)
Registered
relatedFiles() (in module fsl.data.gifti)
relatedGeometryFiles() (in module fsl.data.freesurfer)
relatedVertexDataFiles() (in module fsl.data.freesurfer)
rem() (fsl.wrappers.fslmaths.fslmaths method)
removeAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
removeComponent() (fsl.data.volumelabels.VolumeLabels method)
removeDuplicates() (in module fsl.utils.path)
removeExt() (in module fsl.data.image)
(in module fsl.utils.path)
removeLabel() (fsl.data.volumelabels.VolumeLabels method)
resample() (fsl.data.image.Image method)
(in module fsl.utils.image.resample)
resampleToPixdims() (in module fsl.utils.image.resample)
resampleToReference() (in module fsl.utils.image.resample)
rescanAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
reset() (fsl.data.imagewrapper.ImageWrapper method)
resolve() (in module fsl.utils.filetree.utils)
resolve_optionals() (in module fsl.utils.filetree.utils)
rmsdev() (in module fsl.utils.transform)
robustfov() (in module fsl.wrappers.bet)
rotMatToAffine() (in module fsl.utils.transform)
rotMatToAxisAngles() (in module fsl.utils.transform)
run() (fsl.utils.idle.TaskThread method)
(fsl.wrappers.fslmaths.fslmaths method)
(in module fsl.utils.idle)
(in module fsl.utils.run)
runfsl() (in module fsl.utils.run)
S
sameSpace() (fsl.data.image.Nifti method)
save() (fsl.data.image.Image method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
save_pickle() (fsl.utils.filetree.filetree.FileTree method)
saveLabelFile() (in module fsl.data.fixlabels)
saveState() (fsl.data.image.Image property)
scaledVoxToVoxMat() (fsl.data.image.Nifti property)
scaleOffsetXform() (in module fsl.utils.transform)
scan() (in module fsl.utils.filetree.query)
scanDir() (in module fsl.data.dicom)
search_tree() (in module fsl.utils.filetree.parse)
selectedVertices() (fsl.data.mesh.Mesh method)
set() (in module fsl.utils.settings)
setIdleTimeout() (in module fsl.utils.idle)
setMeta() (fsl.utils.meta.Meta method)
Settings (class in fsl.utils.settings)
sformToFlirtMatrix() (in module fsl.utils.transform)
shallowest() (in module fsl.utils.path)
shape() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Nifti property)
(fsl.data.imagewrapper.ImageWrapper property)
short_name() (fsl.utils.filetree.query.Match property)
short_names() (fsl.utils.filetree.query.FileTreeQuery property)
SHOW_IF_TRUE (in module fsl.wrappers.wrapperutils)
sigloss() (in module fsl.wrappers.fugue)
skip() (fsl.utils.notifier.Notifier method)
skipAll() (fsl.utils.notifier.Notifier method)
skipUnchanged() (in module fsl.utils.memoize)
sliceCovered() (in module fsl.data.imagewrapper)
sliceObjToSliceTuple() (in module fsl.data.imagewrapper)
sliceOverlap() (in module fsl.data.imagewrapper)
slicer() (in module fsl.wrappers.misc)
sliceTupleToSliceObj() (in module fsl.data.imagewrapper)
splitExt() (in module fsl.data.image)
(in module fsl.utils.path)
stop() (fsl.utils.idle.TaskThread method)
strval() (fsl.data.image.Nifti method)
sub() (fsl.wrappers.fslmaths.fslmaths method)
submit() (in module fsl.utils.fslsub)
summariseAtlas() (in module fsl.scripts.atlasq)
surfToVoxMat() (fsl.data.mghimage.MGHImage property)
surfToWorldMat() (fsl.data.mghimage.MGHImage property)
T
Task (class in fsl.utils.idle)
TaskThread (class in fsl.utils.idle)
TaskThreadVeto
tempdir() (in module fsl.utils.tempdir)
template_variables() (fsl.utils.filetree.filetree.FileTree method)
TemporalDerivativeEV (class in fsl.data.featdesign)
tensorToComponents() (in module fsl.data.dtifit)
tensorToEigendecomposition() (in module fsl.data.dtifit)
thr() (fsl.wrappers.fslmaths.fslmaths method)
thresholds() (fsl.data.featimage.FEATImage method)
timeUnits() (fsl.data.image.Nifti property)
Tmax() (fsl.wrappers.fslmaths.fslmaths method)
Tmean() (fsl.wrappers.fslmaths.fslmaths method)
Tmin() (fsl.wrappers.fslmaths.fslmaths method)
topup() (in module fsl.wrappers.eddy)
tr() (fsl.data.melodicimage.MelodicImage property)
transform() (in module fsl.utils.transform)
transformNormal() (in module fsl.utils.transform)
trimesh() (fsl.data.mesh.Mesh property)
Tstd() (fsl.wrappers.fslmaths.fslmaths method)
U
uniquePrefix() (in module fsl.utils.path)
update() (fsl.utils.filetree.filetree.FileTree method)
use() (in module fsl.utils.settings)
uthr() (fsl.wrappers.fslmaths.fslmaths method)
V
V1() (fsl.data.dtifit.DTIFitTensor method)
V2() (fsl.data.dtifit.DTIFitTensor method)
V3() (fsl.data.dtifit.DTIFitTensor method)
variables() (fsl.utils.filetree.query.FileTreeQuery method)
(fsl.utils.filetree.query.Match property)
veclength() (in module fsl.utils.transform)
VERTEX_ANNOT_FILES (in module fsl.data.freesurfer)
VERTEX_DATA_FILES (in module fsl.data.freesurfer)
VERTEX_LABEL_FILES (in module fsl.data.freesurfer)
VERTEX_MGH_FILES (in module fsl.data.freesurfer)
vertexDataSets() (fsl.data.mesh.Mesh method)
vertexSets() (fsl.data.mesh.Mesh method)
vertices() (fsl.data.mesh.Mesh property)
vnormals() (fsl.data.mesh.Mesh property)
VolumeLabels (class in fsl.data.volumelabels)
VoxelwiseConfoundEV (class in fsl.data.featdesign)
VoxelwiseEV (class in fsl.data.featdesign)
VoxelwiseEVMixin (class in fsl.data.featdesign)
voxToScaledVoxMat() (fsl.data.image.Nifti property)
voxToSurfMat() (fsl.data.mghimage.MGHImage property)
voxToWorldMat() (fsl.data.image.Image property)
(fsl.data.image.Nifti property)
VTKMesh (class in fsl.data.vtk)
W
wait() (in module fsl.utils.fslsub)
(in module fsl.utils.idle)
(in module fsl.utils.run)
waitUntilIdle() (fsl.utils.idle.TaskThread method)
WeakFunctionRef (class in fsl.utils.weakfuncref)
worldToSurfMat() (fsl.data.mghimage.MGHImage property)
worldToVoxMat() (fsl.data.image.Nifti property)
write() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeConfigFile() (fsl.utils.settings.Settings method)
writeFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
WX_GTK (in module fsl.utils.platform)
WX_MAC_CARBON (in module fsl.utils.platform)
WX_MAC_COCOA (in module fsl.utils.platform)
WX_PHOENIX (in module fsl.utils.platform)
WX_PYTHON (in module fsl.utils.platform)
WX_UNKNOWN (in module fsl.utils.platform)
wxFlavour() (fsl.utils.platform.Platform property)
wxPlatform() (fsl.utils.platform.Platform property)
X
xyzUnits() (fsl.data.image.Nifti property)