Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/f31-build-57671-28373/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/perl: No such file or directory Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1561939200 Wrote: /builddir/build/SRPMS/bionetgen-2.5.0-4.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/f31-build-57671-28373/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1561939200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.K1a1FY + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.5.0 + /usr/bin/mkdir -p bionetgen-2.5.0 + cd bionetgen-2.5.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.5.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.5.0 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 ~/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0 ~/build/BUILD/bionetgen-2.5.0 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c BUILDSTDERR: cvode-2.6.0/src/cvode/cvode_sp+ popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out ~/build/BUILD/bionetgen-2.5.0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XnewcZ + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + pushd bionetgen-BioNetGen-2.5.0/bng2/Network3 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac + sed -i 's/muparser_.*//' configure.ac Makefile.am + sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am + autoreconf -iv --no-recursive BUILDSTDERR: autoreconf: Entering directory `.' BUILDSTDERR: autoreconf: configure.ac: not using Gettext BUILDSTDERR: autoreconf: running: aclocal -I m4 BUILDSTDERR: aclocal: warning: couldn't open directory 'm4': No such file or directory BUILDSTDERR: autoreconf: configure.ac: tracing BUILDSTDERR: autoreconf: running: libtoolize --copy BUILDSTDERR: autoreconf: running: /usr/bin/autoconf BUILDSTDERR: autoreconf: running: /usr/bin/autoheader BUILDSTDERR: autoreconf: running: automake --add-missing --copy --no-force BUILDSTDERR: configure.ac:12: installing './ar-lib' BUILDSTDERR: configure.ac:12: installing './compile' BUILDSTDERR: configure.ac:16: installing './config.guess' BUILDSTDERR: configure.ac:16: installing './config.sub' BUILDSTDERR: configure.ac:6: installing './install-sh' BUILDSTDERR: configure.ac:6: installing './missing' BUILDSTDERR: src/Makefile.am: installing './depcomp' BUILDSTDERR: autoreconf: Leaving directory `.' + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.guess BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.sub BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh + ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran ~/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3 ~/build/BUILD/bionetgen-2.5.0 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' '/usr/lib/rpm/redhat/config.guess' -> './config.guess' '/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess' '/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub' '/usr/lib/rpm/redhat/config.sub' -> './config.sub' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for riscv64-koji-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for riscv64-koji-linux-gnu-ar... no checking for riscv64-koji-linux-gnu-lib... no checking for riscv64-koji-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for riscv64-koji-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-koji-linux-gnu file names to riscv64-koji-linux-gnu format... func_convert_file_noop checking how to convert riscv64-koji-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for riscv64-koji-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for riscv64-koji-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for riscv64-koji-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for riscv64-koji-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... 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(cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for riscv64-koji-linux-gnu-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--build=riscv64-koji-linux-gnu' '--host=riscv64-koji-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=riscv64-koji-linux-gnu' 'host_alias=riscv64-koji-linux-gnu' 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' --cache-file=/dev/null --srcdir=. --------------------------------- Running SUNDIALS Configure Script --------------------------------- Initialization -------------- checking build system type... riscv64-koji-linux-gnu checking host system type... riscv64-koji-linux-gnu checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c C Compiler Settings ------------------- checking for riscv64-koji-linux-gnu-cc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking floating-point data type to use... double checking for C compiler flags... none checking how to run the C preprocessor... gcc -E checking for C/C++ preprocessor flags... none checking for linker flags... none checking for extra libraries... none checking for ANSI C header files... yes checking for stdlib.h... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for abs in -lm... yes checking for fabs in -lm... yes checking for pow in -lm... yes checking for sqrt in -lm... yes checking for additional required C libraries... -lm checking for int... yes checking size of int... 4 checking for long int... yes checking size of long int... 8 checking for double... yes checking size of double... 8 checking for egrep... (cached) /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking if gcc is a C++ compiler... no Fortran Settings ---------------- checking for riscv64-koji-linux-gnu-f77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for extra Fortran compiler flags... none checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/riscv64-redhat-linux/9 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lgfortran -lm checking which linker to use... gfortran checking for Fortran name-mangling scheme of C identifiers... lower case + one underscore checking for Fortran name-mangling scheme of C identifiers with underscores... lower case + one underscore checking for dgemm_... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lblas... no checking for dgemm_ in -lblas... (cached) no checking for Blas/Lapack library linkage... "no" Unable to determine Blas/Lapack library linkage. Try using --with-blas and --with-lapack. Disabling compilation of Blas/Lapack interfaces... MPI-C Settings -------------- checking if using MPI-C script... yes checking if absolute path to mpicc was given... no BUILDSTDERR: checking for mpicc..configure: WARNING: cannot find MPI-C compiler . none Unable to find a functional MPI-C compiler. Try using --with-mpicc to specify a MPI-C compiler script, --with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs to specify the locations of all relevant MPI files, or --with-mpi-root to specify the base installation directory of the MPI implementation to be used. Disabling the parallel NVECTOR module and all parallel examples... Libtool Settings ---------------- checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for riscv64-koji-linux-gnu-ar... no checking for ar... ar checking for riscv64-koji-linux-gnu-ranlib... no checking for ranlib... ranlib checking for riscv64-koji-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Create Makefiles and configuration files ---------------------------------------- configure: creating ./config.status config.status: creating Makefile config.status: creating src/sundials/Makefile config.status: creating src/nvec_ser/Makefile config.status: creating src/cvode/Makefile config.status: creating src/cvode/fcmix/Makefile config.status: creating include/sundials/sundials_config.h config.status: creating bin/sundials-config config.status: creating config.h *************** * WARNING * *************** At least one warning was issued. Some features were disabled. Review the configure output and/or the contents of config.log before proceeding with the build. ------------------------------ SUNDIALS Configuration Summary BUILDSTDERR: -----++ sed -e s/-Werror=format-security/-Wno-error=format-security/g BUILDSTDERR: ++ echo '-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + SETOPT_FLAGS='-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' ------------------------- Configuration ------------- Host System: riscv64-koji-linux-gnu Build System: riscv64-koji-linux-gnu C Preprocessor: gcc -E C Preprocessor Flags: C Compiler: gcc C Compiler Flags -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection C Linker: gcc Linker Flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld Libraries: -lm Fortran Compiler: gfortran Fortran Compiler Flags: -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules Fortran Linker: gfortran Extra Fortran Libraries: -L/usr/lib/gcc/riscv64-redhat-linux/9 -L/lib64/lp64d/../lib64/lp64d -L/usr/lib64/lp64d/../lib64/lp64d -L/lib/../lib64/lp64d -L/usr/lib/../lib64/lp64d -L/lib64/lp64d -L/usr/lib64/lp64d -lgfortran -lm srcdir: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0 builddir: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0 prefix: /usr exec_prefix: /usr includedir: /usr/include libdir: /usr/lib64 Modules ------- CVODE FCVODE Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0. ---------------------------------- Finished SUNDIALS Configure Script ---------------------------------- ---------------------- Make src/sundials... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c BUILDSTDERR: gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. BUILDSTDERR: make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. ector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' ---------------------- Make src/nvec_ser... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 mkdir .libs ar cru .libs/libsundials_fnvecserial.a fnvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_fnvecserial.a creating libsundials_fnvecserial.la (cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' BUILDSTDERR: make[1]: Entering directory '/builddir/build/BUILD/biomake[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. netgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 ar cru .libs/libsundials_nvecserial.a nvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_nvecserial.a creating libsundials_nvecserial.la (cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' ---------------------- Make src/cvode... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c BUILDSTDERR: gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. hat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Nothing to be done for 'lib_without_bl'. make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 1:0:0 mkdir .libs ar cru .libs/libsundials_cvode.a cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o ranlib .libs/libsundials_cvode.a creating libsundials_cvode.la (cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' ---------------------- Make src/cvode/fcmix... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' BUILDSTDERR: /bin/sh ../../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/rmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' edhat/redhat-hardened-ld -lm -static -version-info 0:1:0 mkdir .libs ar cru .libs/libsundials_fcvode.a fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o ranlib .libs/libsundials_fcvode.a creating libsundials_fcvode.la (cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptionIn file included from util/mathutils/cabs.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cadd.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ s -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tablesutil/mathutils/allocate.c: In function 'ALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 9 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'IALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 100 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 191 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/allocate.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cconj.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ -fstack-clash-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNeIn file included from util/mathutils/complex_zero.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/copy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ tGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -gIn file included from util/mathutils/csub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cprob.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/dotp.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ record-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardeIn file included from util/mathutils/eigensystem.c:1: BUILDSTDERR: util/mathutils/eigensystem.c: In function 'SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:27:11: warning: implicit declaration of function 'dsyev' [-Wimplicit-function-declaration] BUILDSTDERR: 27 | FNAME(dsyev)(&jobz, &uplo, &N, A[0], &N, evals, work, &lwork, &info); BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: 18 | #define FNAME(fun) fun BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/eigensystem.c: In function 'GEN_SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:58:11: warning: implicit declaration of function 'dsygv' [-Wimplicit-function-declaration] BUILDSTDERR: 58 | FNAME(dsygv)(&itype, &jobz, &uplo, &N, A[0], &N, B[0], &N, evals, work, BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: 18 | #define FNAME(fun) fun BUILDSTDERR: | ^~~ BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/expi.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ ned-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usrIn file included from util/mathutils/gram_schmidt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/herm_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/herm_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ /lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_muIn file included from util/mathutils/icmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/init.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/integration.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ lt.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mIn file included from util/mathutils/matherr.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/linsolve.c: In function 'LINSOLVE': BUILDSTDERR: util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 16 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 16 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/linsolve.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ athutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_add.lo util/mathuIn file included from util/mathutils/matrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_elt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ tils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5In file included from util/mathutils/matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ .0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORIn file included from util/mathutils/matrixexp.c:5: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_BRACKET': BUILDSTDERR: util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] BUILDSTDERR: 17 | double ulim,u,r,q,fu,dum; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from util/mathutils/minimum.c:3: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_FIND': BUILDSTDERR: util/mathutils/minimum.c:117:31: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 117 | if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) BUILDSTDERR: | ~~~~~^~~~~~ TIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFutil/mathutils/norm.c: In function 'NORM': BUILDSTDERR: util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: 14 | double norm; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/norm.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/normsq.c: In function 'NORMSQ': BUILDSTDERR: util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: 13 | double norm; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/normsq.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/project.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ Y_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERIn file included from util/mathutils/random.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/rcmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': BUILDSTDERR: util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] BUILDSTDERR: 5 | double **At, *Aptr, *Atptr; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] BUILDSTDERR: 5 | double **At, *Aptr, *Atptr; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/rect_transpose.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ TIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -o util/mathIn file included from util/mathutils/roots.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/roots.c: In function 'ROOT_FIND': BUILDSTDERR: util/mathutils/roots.c:69:17: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 69 | min2=fabs(e*q); BUILDSTDERR: | ~^~ BUILDSTDERR: In file included from util/mathutils/scale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/runge-kutta.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ utils/rect_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -fPICIn file included from util/mathutils/splines.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutIn file included from util/mathutils/sym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sym_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sym_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ ils/sym_linsolve.lo util/mathutils/sym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 BUILDSTDERR: make: Leaving directory '/builddir/build/BUILD/bionetIn file included from util/mathutils/sympos_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main() BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/test_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ gen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testdummy.c: In function 'main': BUILDSTDERR: util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] BUILDSTDERR: 5 | int incx=1; BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 9 | scanf("%d", &n); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: util/mathutils/testdummy.c:15:2: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 15 | scanf("%lf", x+i); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from util/mathutils/testdummy.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 7 | main() BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/testspline.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/svd.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(int argc, char *argv[]){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testgram.c: In function 'main': BUILDSTDERR: util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] BUILDSTDERR: 5 | int nr, n_run; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from util/mathutils/testgram.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c BUILDSTDERR: libtool: compiutil/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(int argc, char *argv[]){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testsvd.c: In function 'main': BUILDSTDERR: util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/testsvd.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from util/mathutils/vector_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ le: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --modIn file included from util/mathutils/vector_dist.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zcopy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zdotc.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ e=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-In file included from util/mathutils/zdotu.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 In file included from util/mathutils/zmatrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fsIn file included from util/mathutils/znorm.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ tack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsqIn file included from util/mathutils/znormsq.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zrscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 6 | main (int argc, char *argv[]) BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testutils.c: In function 'main': BUILDSTDERR: util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] BUILDSTDERR: 15 | dcomplex z1; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] BUILDSTDERR: 10 | int seed; BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] BUILDSTDERR: 8 | int i,j,k; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/testutils.c:2: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ .c -o util/mathutils/znormsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-pIn file included from util/mathutils/zsum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zsym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ rotection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser BUILDSTDERR: libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o mode+ popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 l/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' ~/build/BUILD/bionetgen-2.5.0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZFB5aZ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 + cd bionetgen-2.5.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.5.0/bng2/Network3/src + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen + cp -r bionetgen-BioNetGen-2.5.0/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.5.0/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.5.0/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_riscv64-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.5.0-4.fc31 --unique-debug-suffix -2.5.0-4.fc31.riscv64 --unique-debug-src-base bionetgen-2.5.0-4.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.5.0 BUILDSTDERR: 1829 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/perl5/vendor_perl/BioNetGen' explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/bin/run_network extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/bin/run_network original debug info size: 9628kB, size after compression: 7344kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.aabcuX Processing files: bionetgen-2.5.0-4.fc31.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.22yqWY + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/README.md /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/doc/bionetgen + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.8SZybV + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/LICENSE /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64/usr/share/licenses/bionetgen + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: bionetgen = 2.5.0-4.fc31 bionetgen(riscv-64) = 2.5.0-4.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.5.0-4.fc31.noarch Provides: bionetgen-perl = 2.5.0-4.fc31 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.5.0-4.fc31.riscv64 Provides: bionetgen-debugsource = 2.5.0-4.fc31 bionetgen-debugsource(riscv-64) = 2.5.0-4.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.5.0-4.fc31.riscv64 Provides: bionetgen-debuginfo = 2.5.0-4.fc31 bionetgen-debuginfo(riscv-64) = 2.5.0-4.fc31 debuginfo(build-id) = 8816f1378a72a10793a93dc68a077e14b5c9bdae Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(riscv-64) = 2.5.0-4.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 Wrote: /builddir/build/RPMS/bionetgen-2.5.0-4.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.5.0-4.fc31.riscv64.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.5.0-4.fc31.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.5.0-4.fc31.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.QrzbwV + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.0-4.fc31.riscv64 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0