Mock Version: 1.4.13
Mock Version: 1.4.13
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'], chrootPath='/var/lib/mock/f30-build-39714-22637/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2002697a90>timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Wrote: /builddir/build/SRPMS/seqan-1.4.2-37.fc30.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'], chrootPath='/var/lib/mock/f30-build-39714-22637/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x2002697a90>timeout=345600uid=995gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.WLVppg
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seqan-1.4.2
+ /usr/bin/gzip -dc /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seqan-1.4.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (seqan-docpath.patch):
+ echo 'Patch #0 (seqan-docpath.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0
patching file util/cmake/SeqAnBuildSystem.cmake
Patch #1 (seqan-exclude_splazers_fiona_tests.patch):
+ echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0
patching file core/apps/splazers/CMakeLists.txt
patching file core/apps/fiona/CMakeLists.txt
BUILDSTDERR: ++ find . -perm /111 -type f '(' -name '*.h' -o -name '*.cpp' ')'
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/tests/swift_local/test_find_swift.cpp
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+ chmod a-x ./core/tests/sequence/test_sequence.h
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+ chmod a-x ./core/tests/sequence/test_sequence_v2.cpp
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+ chmod a-x ./core/apps/stellar/stellar.h
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+ chmod a-x ./core/demos/tutorial/index/indices_assignment_2.cpp
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+ chmod a-x ./core/demos/tutorial/graph/graph_dijkstra.cpp
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+ chmod a-x ./core/demos/tutorial/graph/graph_hmm.cpp
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+ chmod a-x ./core/demos/tutorial/find/find_index_multiple.cpp
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+ chmod a-x ./core/demos/tutorial/find/find_assignment3.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
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+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/tutorial/alignments/alignment2_align.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/tutorial/alignments/alignment_gaps.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global2.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/sam2svg.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/annotation_converter.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/howto/filter_similar_sequences.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/gff2gtf.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./core/demos/sequence/string2.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./util/cmake/SeqAnVersion.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rgraph_base.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/assembly_parser.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rgraph_score.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rgraph.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/utils.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rgraph_construction.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/column_scanner.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rgraph_heuristics.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/rep_sep/rep_sep.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/bs_tools/casbar.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/bs_tools/casbar.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/razers3/profile_timeline.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/razers3/quality2prob.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/razers3/simulate_reads.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/razers3/parallel_store.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/razers3/compPHSens.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/sgip/sgip_base.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/sgip/sgip.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/sgip/sgip.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/sgip/sgip_output.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/variant_comp/variant_comp.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/variant_comp/variant_comp.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/breakpoint_calculator/parse_alignment.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_calculator.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_counts.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_calculator.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/math/math_operators.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/math/math_common_factor.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/math/math_rational.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/sequence/iterator_range.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/index_extras.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/include/seqan/math.h
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/find_motif_pms1.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/code_encapsulation.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_4.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_3.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/final_result.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/basic_code_detailed.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_6.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/basic_code.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_1.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_5.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/first_steps/solution_2.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/find_motif.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/solution4.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/solution2.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/solution5.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/solution1.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/mini_bowtie.cpp
+ for i in `find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`
+ chmod a-x ./extras/demos/tutorial/mini_bowtie/solution3.cpp
+ cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt
+ cp -p core/apps/rabema/LICENSE GPLv3+.txt
+ cp -p LICENSE BSD.txt
+ cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.NqwIZa
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ mkdir -p build/Release
+ pushd build/Release
~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2
+ SEQAN_OPT_FLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now'
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now'
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now'
+ export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now'
+ cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../..
-- The C compiler identification is GNU 8.2.1
-- The CXX compiler identification is GNU 8.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Detecting C compile features
-- Detecting C compile features - failed
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Initializing SeqAn Build System...
-- No revision system found.
--   Repository date not determined.
--   Repository revision not determined.
-- Configuring core
-- Configuring core/apps
-- Configuring core/apps/dfi
-- Looking for include file execinfo.h
-- Looking for include file execinfo.h - found
--   Determined version is 1.4.2
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.15") 
-- Configuring core/apps/fiona
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Boost version: 1.66.0
-- Configuring core/apps/mason
-- Configuring core/apps/micro_razers
-- Configuring core/apps/pair_align
-- Configuring core/apps/rabema
-- Configuring core/apps/razers
-- Configuring core/apps/razers2
-- Configuring core/apps/sak
-- Configuring core/apps/sam2matrix
-- Configuring core/apps/samcat
-- Configuring core/apps/seqan_tcoffee
-- Configuring core/apps/seqcons
-- Configuring core/apps/snp_store
-- Boost version: 1.66.0
-- Configuring core/apps/splazers
-- Configuring core/apps/stellar
-- Configuring core/apps/tree_recon
-- Configuring extras
-- Configuring extras/apps
-- Configuring extras/apps/alf
-- Configuring extras/apps/breakpoint_calculator
-- Configuring extras/apps/bs_tools
-- Boost version: 1.66.0
-- Configuring extras/apps/fx_tools
-- Configuring extras/apps/gustaf
-- Configuring extras/apps/insegt
-- Configuring extras/apps/mason2
-- Configuring sandbox/jagla/apps/ngs_roi
-- Configuring extras/apps/param_chooser
-- Configuring extras/apps/razers3
-- Performing Test CXX11_FOUND
-- Performing Test CXX11_FOUND - Success
-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2
-- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found
-- Configuring extras/apps/rep_sep
-- Configuring extras/apps/searchjoin
-- Configuring extras/apps/seqan_flexbar
-- Configuring extras/apps/sgip
-- Configuring extras/apps/variant_comp
-- Configuring docs
-- Configuring manual
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
--   Sphinx not found, not building sphinx manual as a test.
-- Configuring sandbox
-- Configuring util/py_lib
--   adding nosetests for seqan.dox
-- Found Java: /usr/bin/java (found version "1.8.0_181") 
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_SKIP_INSTALL_RPATH
BUILDSTDERR:     SEQAN_APP_VERSION
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release
+ make all
/usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color=
Scanning dependencies of target seqan_core
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color=
Scanning dependencies of target dfi
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:153:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13:   required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >; TDatasets = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19:   required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>; TParamPredHull = seqan::String<unsigned int, seqan::Alloc<> >; TParamPred = seqan::String<unsigned int, seqan::Alloc<> >; TFileNames = std::vector<std::__cxx11::basic_string<char> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:147:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:4: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:     switch (options.alphabet)
BUILDSTDERR:     ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:3: note: here
BUILDSTDERR:    case 1:
BUILDSTDERR:    ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:4: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:     switch (options.alphabet)
BUILDSTDERR:     ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:3: note: here
BUILDSTDERR:    case 2:
BUILDSTDERR:    ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[  1%] Linking CXX executable ../../../bin/dfi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o  -o ../../../bin/dfi -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  1%] Built target dfi
make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color=
Scanning dependencies of target fiona
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   Dna5String tmp;
BUILDSTDERR:   ^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (options.errorrate != 0 && options.wovsum != 0)
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(store.readSeqStore); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   TFionaQgramIndex qgramIndex(prefixes);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (inTerm && options.verbosity >= 2)
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   resize(store.readSeqStore, readCount);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
BUILDSTDERR:   ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (!loadReadsNoNames(store, options.inputFilename, options))
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   options.autolevel = (options.fromLevel <= 1);
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != 0)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (options.verbosity >= 1 && options.cycles > 1)
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:50:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from 'unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from 'unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/compiletime_settings.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/parallel.h:37,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/base.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/algobase.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algobase.h:1439,
BUILDSTDERR:                  from /usr/include/c++/8/bits/char_traits.h:39,
BUILDSTDERR:                  from /usr/include/c++/8/ios:40,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  3%] Linking CXX executable ../../../bin/fiona
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o  -o ../../../bin/fiona -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  3%] Built target fiona
make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color=
Scanning dependencies of target compute_gain
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<> >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20:   required from 'typename seqan::EnableIf<typename seqan::Or<typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFasta_> >::Type, typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFastq_> >::Type>::Type, int>::Type seqan::read2(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, seqan::RecordReader<TFile, seqan::SinglePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFile = std::basic_fstream<char>; TSpec = void; TTag = seqan::Tag<seqan::TagFasta_>; typename seqan::EnableIf<typename seqan::Or<typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFasta_> >::Type, typename seqan::IsSameType<typename seqan::RemoveConst_<TTag>::Type, seqan::Tag<seqan::TagFastq_> >::Type>::Type, int>::Type = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  4%] Linking CXX executable ../../../bin/compute_gain
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o  -o ../../../bin/compute_gain -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Built target compute_gain
make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color=
Scanning dependencies of target fiona_illumina
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  4%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++  -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   Dna5String tmp;
BUILDSTDERR:   ^~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 2)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (options.errorrate != 0 && options.wovsum != 0)
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(store.readSeqStore); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   TFionaQgramIndex qgramIndex(prefixes);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (inTerm && options.verbosity >= 2)
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   resize(store.readSeqStore, readCount);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   bool autoCycles = (options.cycles == 0 || options.cycles == 1000);
BUILDSTDERR:   ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (!loadReadsNoNames(store, options.inputFilename, options))
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (options.verbosity >= 1)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   options.autolevel = (options.fromLevel <= 1);
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != 0)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (options.verbosity >= 1 && options.cycles > 1)
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:50:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from 'unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22:   required from 'unsigned int applyReadErrorCorrections(const seqan::String<TString>&, seqan::String<TAlphabet>&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore<void, FionaStoreConfig>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104:   required from 'void seqan::assign(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11:   required from 'void seqan::operator<<(seqan::Range<TIterator>&, seqan::Pipe<TInput, TPipeSpec>&) [with TIterator = seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >*; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPipeSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TSpec = seqan::IndexSa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >; TIndexSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<seqan::ParentLinks<TSpec> > > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24:   required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag<TSpec>) [with TFragmentStore = seqan::FragmentStore<void, FionaStoreConfig>; TAlgorithm = FionaPoisson_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:75:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, short unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/compiletime_settings.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/parallel.h:37,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/base.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/parallel/algobase.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algobase.h:1439,
BUILDSTDERR:                  from /usr/include/c++/8/bits/char_traits.h:39,
BUILDSTDERR:                  from /usr/include/c++/8/ios:40,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  6%] Linking CXX executable ../../../bin/fiona_illumina
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o  -o ../../../bin/fiona_illumina -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  6%] Built target fiona_illumina
make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color=
Scanning dependencies of target mason
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from 'typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = long unsigned int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12:   required from 'int writeRandomSequence(TRNG&, size_t, const CharString&, const TOptions&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TOptions = Options<seqan::Tag<IlluminaReads_> >; size_t = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38:   required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31:   required from 'int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<char, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from 'void seqan::insert(seqan::String<TValue_, seqan::Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>; TString = seqan::String<char, seqan::Alloc<> >; TPos = long int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:65:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19:   required from 'typename seqan::Size<T>::Type seqan::reserve(T&, const TSize&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12:   required from 'void buildHaplotype(seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Journaled<seqan::Alloc<> > > >&, seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, seqan::String<seqan::String<Snp> >&, TRNG&, const Options<void>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27:   required from 'int simulateReadsMain(seqan::FragmentStore<seqan::MyFragmentStoreConfig>&, TRNG&, const TOptions&, const ModelParameters<TSpec>&) [with TRNG = seqan::Rng<seqan::MersenneTwister>; TReadsTag = seqan::Tag<IlluminaReads_>; TOptions = Options<seqan::Tag<IlluminaReads_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28:   required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options<seqan::Tag<IlluminaReads_> >; TReadsTypeTag = seqan::Tag<IlluminaReads_>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:73:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<char, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<char, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11:   required from 'void seqan::insert(seqan::String<TValue_, seqan::Journaled<THostSpec_, TJournalSpec_, TBufferSpec_> >&, TPos, const TString&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; THostSpec = seqan::Alloc<>; TJournalSpec = seqan::SortedArray; TBufferSpec = seqan::Alloc<>; TString = seqan::String<char, seqan::Alloc<> >; TPos = long int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:65:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/stl_construct.h:59,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tempbuf.h:60,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algo.h:62,
BUILDSTDERR:                  from /usr/include/c++/8/algorithm:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<> >; TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<IlluminaReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/stl_construct.h:59,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tempbuf.h:60,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algo.h:62,
BUILDSTDERR:                  from /usr/include/c++/8/algorithm:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<IlluminaReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<> >; TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<SangerReads_> >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<SangerReads_> >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<SangerReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/stl_construct.h:59,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tempbuf.h:60,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algo.h:62,
BUILDSTDERR:                  from /usr/include/c++/8/algorithm:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<SangerReads_>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<> >; TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = ReadSimulationInstruction<seqan::Tag<_LS454Reads> >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<ReadSimulationInstruction<seqan::Tag<_LS454Reads> >, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551408' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/stl_construct.h:59,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tempbuf.h:60,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_algo.h:62,
BUILDSTDERR:                  from /usr/include/c++/8/algorithm:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'int buildReadSimulationInstruction(seqan::String<ReadSimulationInstruction<TReadsTag> >&, TRNG&, const unsigned int&, const seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, THaplotypeSpec> >&, const seqan::String<double>&, const size_t&, bool, const ModelParameters<TReadsTag>&, const Options<TReadsTag>&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng<seqan::MersenneTwister>; THaplotypeSpec = seqan::Alloc<>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[  8%] Linking CXX executable ../../../bin/mason
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o  -o ../../../bin/mason -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Built target mason
make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color=
Scanning dependencies of target micro_razers
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from 'int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:44:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from 'int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19:   required from 'int mapMicroRNAReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:92:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:49:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
[  9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[  9%] Linking CXX executable ../../../bin/micro_razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o  -o ../../../bin/micro_razers -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color=
Scanning dependencies of target pair_align
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = void; TSpec = const seqan::Tag<seqan::WithoutEdgeId_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from 'void seqan::write(TFile&, const seqan::Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, const seqan::Tag<seqan::WithoutEdgeId_> >; TNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; seqan::FastaFormat = const seqan::Tag<seqan::FastaFormat_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = void; TSpec = const seqan::Tag<seqan::WithoutEdgeId_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from 'void seqan::write(TFile&, const seqan::Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, const seqan::Tag<seqan::WithoutEdgeId_> >; TNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; seqan::FastaFormat = const seqan::Tag<seqan::FastaFormat_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = void; TSpec = const seqan::Tag<seqan::WithoutEdgeId_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22:   required from 'void seqan::write(TFile&, const seqan::Graph<TSpec>&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = seqan::Alignment<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, void, const seqan::Tag<seqan::WithoutEdgeId_> >; TNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; seqan::FastaFormat = const seqan::Tag<seqan::FastaFormat_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14:   required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TAlignConfig = seqan::AlignConfig<true, true, true, true>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >; TSeqFile = std::__cxx11::basic_string<char>; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string<char>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76:   required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 11%] Linking CXX executable ../../../bin/pair_align
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o  -o ../../../bin/pair_align -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color=
Scanning dependencies of target rabema_build_gold_standard
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from 'int seqan::readRegion(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from 'int seqan::readSequence(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29:   required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String<int>&, TStreamOrReader&, seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag<seqan::MyersUkkonenReads_>; TStreamOrReader = seqan::RecordReader<std::basic_ifstream<char>, seqan::SinglePass<void> >; TFormat = seqan::Tag<seqan::Sam_>; TErrorCurves = std::map<int, seqan::String<WeightedMatch> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1253:101:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Linking CXX executable ../../../bin/rabema_build_gold_standard
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o  -o ../../../bin/rabema_build_gold_standard -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_build_gold_standard
make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color=
Scanning dependencies of target rabema_prepare_sam
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 14%] Linking CXX executable ../../../bin/rabema_prepare_sam
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o  -o ../../../bin/rabema_prepare_sam -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_prepare_sam
make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color=
Scanning dependencies of target rabema_evaluate
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:65:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_evaluate
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o  -o ../../../bin/rabema_evaluate -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color=
Scanning dependencies of target rabema_do_search
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:2:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Linking CXX executable ../../../bin/rabema_do_search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o  -o ../../../bin/rabema_do_search -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color=
Scanning dependencies of target razers
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else if (endsWith(tmp, ".gff"))
BUILDSTDERR:           ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (isSet(parser, "shape"))
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if ((options.minClippedLen < 0) && (stop = true))
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from 'static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, const TSource&) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13:   required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TReads = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
[ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp
[ 19%] Linking CXX executable ../../../bin/razers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o  -o ../../../bin/razers -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color=
Scanning dependencies of target razers2
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (!isSet(parser, "read-naming") && options.outputFormat == 4)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (isSet(parser, "shape"))
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   options.errorRate = (100.0 - options.errorRate) / 100.0;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:44:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp
[ 20%] Linking CXX executable ../../../bin/razers2
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o  -o ../../../bin/razers2 -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
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cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color=
Scanning dependencies of target sak
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 22%] Linking CXX executable ../../../bin/sak
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o  -o ../../../bin/sak -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color=
Scanning dependencies of target sam2matrix
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13:   required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:42:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/ext/new_allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/riscv64-redhat-linux/bits/c++allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/bits/allocator.h:46,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tree.h:64,
BUILDSTDERR:                  from /usr/include/c++/8/map:60,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /usr/include/c++/8/array:39,
BUILDSTDERR:                  from /usr/include/c++/8/tuple:39,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_map.h:63,
BUILDSTDERR:                  from /usr/include/c++/8/map:61,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 24%] Linking CXX executable ../../../bin/sam2matrix
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o  -o ../../../bin/sam2matrix -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color=
Scanning dependencies of target samcat
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/samcat
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o  -o ../../../bin/samcat -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color=
Scanning dependencies of target seqan_tcoffee
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = long unsigned int; TSpec = seqan::Tag<seqan::Default_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from 'void seqan::evaluateAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Rna5_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = long unsigned int; TSpec = seqan::Tag<seqan::Default_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from 'void seqan::evaluateAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::Rna5_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17:   required from 'bool seqan::convertAlignment(const seqan::Graph<seqan::Alignment<TStringSet, TCargo, TSpec> >&, TMatrix&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::AminoAcid_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >; TCargo = long unsigned int; TSpec = seqan::Tag<seqan::Default_>; TMatrix = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22:   required from 'void seqan::evaluateAlignment(const seqan::MsaOptions<TAlphabet, TScore>&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26:   required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TScore = seqan::Score<int, seqan::ScoreMatrix<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Linking CXX executable ../../../bin/seqan_tcoffee
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o  -o ../../../bin/seqan_tcoffee -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color=
Scanning dependencies of target seqcons
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
BUILDSTDERR:    ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     diff = (itGaps->gapPos - itGaps->seqPos);
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != seqan::ArgumentParser::PARSE_OK)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   getOptionValue(consOpt.readsfile, parser, "reads");
BUILDSTDERR:   ^~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != seqan::ArgumentParser::PARSE_OK)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   typedef FragmentStore<> TFragmentStore;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15:   required from 'void seqan::reAlign(seqan::FragmentStore<TSpec, TConfig>&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TScore = seqan::Score<int, seqan::WeightedConsensusScore<seqan::Score<int, const seqan::Tag<seqan::FractionalScore_> >, seqan::Score<int, const seqan::Tag<seqan::ConsensusScore_> > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:105:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from 'int seqan::_convertSimpleReadFile(TFile&, seqan::FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14:   required from 'int seqan::_convertSimpleReadFile(TFile&, seqan::FragmentStore<TSpec, TConfig>&, TFilePath&, bool) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TFilePath = const std::__cxx11::basic_string<char>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29:   required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:60:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
BUILDSTDERR:              case 'I':
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Nothing, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
BUILDSTDERR:              case 'I':
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Nothing, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
BUILDSTDERR:              case 'D':
BUILDSTDERR:              ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Linking CXX executable ../../../bin/seqcons
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o  -o ../../../bin/seqcons -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color=
Scanning dependencies of target snp_store
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
BUILDSTDERR:    ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     diff = (itGaps->gapPos - itGaps->seqPos);
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12:   required from 'int seqan::readNChars(TBuffer&, seqan::RecordReader<TStream, TPass>&, unsigned int) [with TBuffer = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TStream = std::basic_fstream<char>; TPass = seqan::SinglePass<void>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39:   required from 'int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, seqan::String<seqan::Pair<int> >&, seqan::StringSet<TSequence>&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream<char>*; TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TReadCounts = seqan::String<unsigned int, seqan::Alloc<> >; TCigarStr = seqan::String<seqan::Pair<char, int> >; TGenome = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TGenomeIdMap = std::map<seqan::String<char, seqan::Alloc<> >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = seqan::SNPCallingOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54:   required from 'int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28:   required from 'void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TReadCigars = seqan::StringSet<seqan::String<seqan::Pair<char, int> > >; TReadCounts = seqan::String<unsigned int, seqan::Alloc<> >; TGenomeName = seqan::String<char, seqan::Alloc<> >; TFile = std::basic_ofstream<char>; TOptions = seqan::SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38:   required from 'int detectSNPs(seqan::SNPCallingOptions<TSpec>&) [with TSpec = seqan::SNPCallingSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:36:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/snp_store
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o  -o ../../../bin/snp_store -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color=
Scanning dependencies of target splazers
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (skipWhitespaces(reader) != 0)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   int kickout = 0;
BUILDSTDERR:   ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (pm_options.verbose)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   resize(avg,pm_options.totalN,(TFloat)0.0);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions<TSpec>&, TFile&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (value(reader) == 'e')
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   bool atLeastOneFound = false;
BUILDSTDERR:   ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(readFileNames); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   if(length(readFileNames) == 2)
BUILDSTDERR:   ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((getArgumentValueCount(parser, 1) == 0) && (stop = true))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if ((options.minClippedLen < 0) && (stop = true))
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31:   required from 'static void seqan::AssignString_<TExpand>::assign_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, const TSource&) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >& seqan::String<TValue, seqan::Alloc<TSpec> >::operator=(const TSource&) [with TSource = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13:   required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, seqan::CharString, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TGenomeNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TReads = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadRegions = seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long int, seqan::BitPacked<2, 64> > > >; TReadNames = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14:   required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TNameSet = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:41:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25:   required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, seqan::TReadRegions&, seqan::Pattern<TReadIndexL, seqan::Swift<TSwiftSpec> >&, seqan::Pattern<TReadIndexR, seqan::Swift<TSwiftSpec> >&, TVerifier&, TVerifier&, TCounts&, char, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TGenome = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TOriReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadIndexL = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >; TReadIndexR = seqan::Index<seqan::StringSet<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram<seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >, seqan::Tag<seqan::Default_> > >; TSwiftSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >; TVerifier = seqan::String<seqan::Pattern<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::Myers<seqan::FindInfix, seqan::True, void> >, seqan::Alloc<> >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long int, seqan::BitPacked<2, 64> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20:   required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet_&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions<TSpec>&, const TShapeL&, const TShapeR&, seqan::Swift<TSwiftSpec>) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TReadSet_ = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; TShapeL = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TShapeR = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag<seqan::SwiftSemiGlobal_<void> >; seqan::TReadRegions = seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long int, seqan::BitPacked<2, 64> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27:   required from 'int seqan::mapSplicedReads(TMatches&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long int, seqan::BitPacked<2, 64> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31:   required from 'int seqan::mapReads(TMatches&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, std::map<unsigned int, std::pair<std::__cxx11::basic_string<char>, unsigned int> >&, TReadSet&, seqan::TReadRegions&, TCounts&, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<long int> >; TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; seqan::TReadRegions = seqan::String<seqan::Pair<unsigned int, seqan::Pair<unsigned int, long int, seqan::BitPacked<2, 64> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::CharString&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Linking CXX executable ../../../bin/splazers
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o  -o ../../../bin/splazers -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color=
Scanning dependencies of target stellar
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Rna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Rna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Rna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Rna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Rna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Rna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::AminoAcid_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::AminoAcid_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:53:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::AminoAcid_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26:   required from 'void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17:   required from 'void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16:   required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TPattern = seqan::Pattern<seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Dependent<seqan::Tag<seqan::TagInsist_> > >, seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> > >, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > >, seqan::Owner<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31:   required from 'bool _stellarOnAll(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, StellarOptions&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23:   required from 'int mainWithOptions(TOptions&, seqan::String<TAlphabet>) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TValue = seqan::ScoreAndID<int, long unsigned int>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'void seqan::pop(seqan::PriorityType<TValue, TLess, seqan::PriorityHeap>&) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TLess = std::less<seqan::ScoreAndID<int, long unsigned int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24:
BUILDSTDERR: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType<TValue, TLess, seqan::PriorityHeap>&) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TLess = std::less<seqan::ScoreAndID<int, long unsigned int> >]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 30%] Linking CXX executable ../../../bin/stellar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o  -o ../../../bin/stellar -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target stellar
make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color=
Scanning dependencies of target tree_recon
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != seqan::ArgumentParser::PARSE_OK)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   typedef double TDistanceValue;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:   String<TName> names;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/tree_recon
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o  -o ../../../bin/tree_recon -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target tree_recon
make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color=
Scanning dependencies of target seqan_extras
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target seqan_extras
make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color=
Scanning dependencies of target alf
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from 'seqan::String<TValue, TSpec>& seqan::operator+=(seqan::String<TValue, TSpec>&, const TRight&) [with TLeftValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TLeftSpec = seqan::Alloc<>; TRight = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = unsigned int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9:   required from 'void seqan::unhash(TString&, THash, unsigned int) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; THash = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:23:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<> >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:63:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11:   required from 'seqan::String<TValue, TSpec>& seqan::operator+=(seqan::String<TValue, TSpec>&, const TRight&) [with TLeftValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TLeftSpec = seqan::Alloc<>; TRight = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from 'void seqan::calculateCovariance(TValue&, const seqan::String<TAlphabet, TSpec>&, const seqan::String<TAlphabet, TSpec>&, seqan::MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = seqan::Alloc<>; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from 'void seqan::_standardiseCounts(TString&, const seqan::String<unsigned int, seqan::Alloc<> >&, const seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> > >&, const TSequence&, const seqan::AFScore<const seqan::Tag<seqan::N2_> >&) [with TString = seqan::String<double>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from 'void seqan::_alignmentFreeComparison(seqan::Matrix<TValue, 2>&, const TStringSet&, const seqan::AFScore<const seqan::Tag<seqan::N2_> >&) [with TValue = double; TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from 'void seqan::alignmentFreeComparison(seqan::Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore<const seqan::Tag<seqan::N2_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:67:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15:   required from 'void seqan::calculateCovariance(TValue&, const seqan::String<TAlphabet, TSpec>&, const seqan::String<TAlphabet, TSpec>&, seqan::MarkovModel<TAlphabet, TValue>&, int) [with TValue = double; TSpec = seqan::Alloc<>; TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48:   required from 'void seqan::_standardiseCounts(TString&, const seqan::String<unsigned int, seqan::Alloc<> >&, const seqan::StringSet<seqan::String<unsigned int, seqan::Alloc<> > >&, const TSequence&, const seqan::AFScore<const seqan::Tag<seqan::N2_> >&) [with TString = seqan::String<double>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27:   required from 'void seqan::_alignmentFreeComparison(seqan::Matrix<TValue, 2>&, const TStringSet&, const seqan::AFScore<const seqan::Tag<seqan::N2_> >&) [with TValue = double; TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29:   required from 'void seqan::alignmentFreeComparison(seqan::Matrix<TFloat, 2>&, const TStringSet&, const TComparisonMethod&) [with TStringSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = double; TComparisonMethod = seqan::AFScore<const seqan::Tag<seqan::N2_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:67:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/alf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o  -o ../../../bin/alf -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color=
Scanning dependencies of target breakpoint_calculator
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 32%] Linking CXX executable ../../../bin/breakpoint_calculator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o  -o ../../../bin/breakpoint_calculator -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color=
Scanning dependencies of target casbar
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
BUILDSTDERR:    ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     diff = (itGaps->gapPos - itGaps->seqPos);
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15:   required from 'int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext<TNameStore>&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TFragmentStore = seqan::FragmentStore<seqan::SnpStoreSpec_>; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value<TMatrix>::Type = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47:   required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore<TSpec>&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String<seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >*>; TContexts = seqan::String<seqan::BamIOContext<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > > >; TRecords = seqan::String<seqan::BamAlignmentRecord>; TContigIntervals = seqan::String<seqan::String<seqan::Interval<long int> > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32:   required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:49:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
BUILDSTDERR:              case 'I':
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Nothing, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
BUILDSTDERR:              case 'D':
BUILDSTDERR:              ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score<TValue, seqan::BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, seqan::BsTop&) [with TValue = double; TString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::DnaMR_>, double> >; TBsProfileScore = const seqan::Tag<seqan::BsProfileScoreCT_>; TModel = seqan::Tag<seqan::BsSimple_>; TCellDescriptor = seqan::Tag<seqan::InnerCell_>; TMethOptions = MethCallingOptions]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
BUILDSTDERR:                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
BUILDSTDERR:              case -1: // Ref gap
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score<TValue, seqan::BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, seqan::BsTop&) [with TValue = double; TString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::DnaMR_>, double> >; TBsProfileScore = const seqan::Tag<seqan::BsProfileScoreCTRight_>; TModel = seqan::Tag<seqan::BsSimple_>; TCellDescriptor = seqan::Tag<seqan::InnerCell_>; TMethOptions = MethCallingOptions]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0;   // T
BUILDSTDERR:                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here
BUILDSTDERR:              case -1: // Ref gap
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score<TValue, seqan::BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, seqan::BsBottom&) [with TValue = double; TString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::DnaMR_>, double> >; TBsProfileScore = const seqan::Tag<seqan::BsProfileScoreGA_>; TModel = seqan::Tag<seqan::BsSimple_>; TCellDescriptor = seqan::Tag<seqan::InnerCell_>; TMethOptions = MethCallingOptions]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
BUILDSTDERR:                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
BUILDSTDERR:              case -1: // Ref gap
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(seqan::Score<TValue, seqan::BsTagList<TBsProfileScore, TModel, TCellDescriptor> >&, const TString&, TMethOptions&, seqan::BsBottom&) [with TValue = double; TString = seqan::String<seqan::ProfileChar<seqan::SimpleType<unsigned char, seqan::DnaMR_>, double> >; TBsProfileScore = const seqan::Tag<seqan::BsProfileScoreGARight_>; TModel = seqan::Tag<seqan::BsSimple_>; TCellDescriptor = seqan::Tag<seqan::InnerCell_>; TMethOptions = MethCallingOptions]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:17: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  me.targetFreqs[i][3] += (1.0/sum)/4.0;                  // T
BUILDSTDERR:                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here
BUILDSTDERR:              case -1: // Ref gap
BUILDSTDERR:              ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 33%] Linking CXX executable ../../../bin/casbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o  -o ../../../bin/casbar -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target casbar
make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color=
Scanning dependencies of target bisar
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18:   required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20:   required from 'int writeBsAlignment(TStream&, const seqan::BamIOContext<TNameStore, TNameStoreCache>&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream<char>; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore<seqan::MyFragmentStoreConfig>; TContigGaps = seqan::Gaps<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41:   required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from 'bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = seqan::MyFragmentStoreConfig; TConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17:   required from 'bool loadReadsCroppedId(seqan::FragmentStore<TSpec, TConfig>&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig<seqan::MyFragmentStoreConfig>; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27:   required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag<seqan::BsNonSimple_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Linking CXX executable ../../../bin/bisar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o  -o ../../../bin/bisar -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target bisar
make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color=
Scanning dependencies of target four2three
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Linking CXX executable ../../../bin/four2three
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o  -o ../../../bin/four2three -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color=
Scanning dependencies of target fx_fastq_stats
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, TQualString&, seqan::RecordReader<TFile, TSpec>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualString = seqan::String<char, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40:   required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualities = seqan::String<char, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:13:   required from 'int seqan::readRecord(TId&, TSequence&, TQualities&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TQualities = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/ext/new_allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/riscv64-redhat-linux/bits/c++allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/bits/allocator.h:46,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_tree.h:64,
BUILDSTDERR:                  from /usr/include/c++/8/map:60,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /usr/include/c++/8/array:39,
BUILDSTDERR:                  from /usr/include/c++/8/tuple:39,
BUILDSTDERR:                  from /usr/include/c++/8/bits/stl_map.h:63,
BUILDSTDERR:                  from /usr/include/c++/8/map:61,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 37%] Linking CXX executable ../../../bin/fx_fastq_stats
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o  -o ../../../bin/fx_fastq_stats -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target fx_fastq_stats
make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color=
Scanning dependencies of target fx_bam_coverage
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from 'int seqan::readRegion(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from 'int seqan::readSequence(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Linking CXX executable ../../../bin/fx_bam_coverage
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o  -o ../../../bin/fx_bam_coverage -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_bam_coverage
make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color=
Scanning dependencies of target gustaf
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8:   required from 'bool _writeGlobalBreakpoints(const seqan::String<TString>&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TId>&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::Vcf = seqan::Tag<seqan::Vcf_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:94:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from 'bool _importSequences(const CharString&, const CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:168:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15:   required from 'bool _importSequences(const CharString&, const CharString&, bool, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::String<unsigned int, seqan::Alloc<> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:168:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::TraceBack_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::TraceBack_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26:   required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed<seqan::Tag<seqan::Simple_> >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22:   required from 'bool _extendAndExtract(const seqan::Align<seqan::Segment<seqan::Segment<TSequence, seqan::InfixSegment>, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, const seqan::Segment<typename seqan::Infix<TText>::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score<int, seqan::Tag<seqan::Simple_> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Tag<seqan::ArrayGaps_> >; typename seqan::Infix<TText>::Type = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26:   required from 'void verifySwiftHit(const seqan::Segment<THost_, seqan::InfixSegment>&, const seqan::Segment<THost_, seqan::InfixSegment>&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches<StellarMatch<TSource, TId> >&, TTag) [with TInfix = seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String<char, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17:   required from 'void stellar(seqan::Finder<TText, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, seqan::Pattern<seqan::Index<seqan::StringSet<TString, TSpec>, TSpec>, seqan::Swift<seqan::Tag<seqan::SwiftLocal_> > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet<QueryMatches<StellarMatch<TSource, TId> > >&, TTag) [with TText = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent<seqan::Tag<seqan::TagInsist_> >; TIndexSpec = seqan::IndexQGram<seqan::UngappedShape<0>, seqan::Tag<seqan::OpenAddressing_> >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TId = seqan::String<char, seqan::Alloc<> >; TTag = seqan::Tag<VerifyAllLocal_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20:   required from 'void _getStellarMatches(seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<TString, seqan::Owner<> >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TMatches = seqan::StringSet<QueryMatches<StellarMatch<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::String<char, seqan::Alloc<> > > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:91:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::TraceBack_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TValue = seqan::ScoreAndID<int, long unsigned int>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::ScoreAndID<int, long unsigned int>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'void seqan::pop(seqan::PriorityType<TValue, TLess, seqan::PriorityHeap>&) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TLess = std::less<seqan::ScoreAndID<int, long unsigned int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24:
BUILDSTDERR: /usr/include/c++/8/new: In function 'void seqan::pop(seqan::PriorityType<TValue, TLess, seqan::PriorityHeap>&) [with TValue = seqan::ScoreAndID<int, long unsigned int>; TLess = std::less<seqan::ScoreAndID<int, long unsigned int> >]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 40%] Linking CXX executable ../../../bin/gustaf
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o  -o ../../../bin/gustaf -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color=
Scanning dependencies of target insegt
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function 'void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, seqan::FragmentStore<TSpec, TConfig>&, TMap&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:          if (getValue(itAnno).typeId != INVALID_ID)
BUILDSTDERR:          ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:    if (getValue(itAnno).contigId == INVALID_ID )
BUILDSTDERR:    ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function 'bool seqan::ngsOverlapper(TOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (!readOutput.good())
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   createReadCountGFF(readOutput, readAnnoStore, fragStore);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (!annoOutput.good())
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (!tupleOutput.good())
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM);
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function 'int main(int, const char**)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (res != ArgumentParser::PARSE_OK)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (options.maxTuple)
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::ContigStoreElement<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::GapAnchor<long int>, void>, seqan::Alloc<> >; TValue = seqan::ContigStoreElement<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::GapAnchor<long int>, void>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14:   required from 'void seqan::_storeAppendContig(seqan::FragmentStore<TSpec, TConfig>&, TId&, TName&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = unsigned int; TName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23:   required from 'void seqan::_storeOneAnnotation(TFragmentStore&, seqan::IOContextGff_<TFragmentStore, TSpec>&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32:   required from 'void seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, seqan::Gff) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Gff = seqan::Tag<seqan::TagGff_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10:   required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from 'void seqan::_readAlignments(TStreamOrReader&, seqan::BamIOContext<TNameStore, TNameStoreCache>&, seqan::FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > >, seqan::String<char, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TContigAnchorGaps = seqan::StringSet<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<void> > >; TMatchMateInfos = seqan::String<seqan::MatchMateInfo_<long int, unsigned int>, seqan::Alloc<> >; TTag = seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore<TSpec, TConfig>&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TTag = seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from 'void seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Sam = const seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from 'void seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Sam = const seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30:   required from 'void seqan::_readAlignments(TStreamOrReader&, seqan::BamIOContext<TNameStore, TNameStoreCache>&, seqan::FragmentStore<TSpec, TConfig>&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TNameStore = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TNameStoreCache = seqan::NameStoreCache<seqan::StringSet<seqan::String<char, seqan::Alloc<> > >, seqan::String<char, seqan::Alloc<> > >; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TContigAnchorGaps = seqan::StringSet<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> >, seqan::Owner<seqan::ConcatDirect<void> > >; TMatchMateInfos = seqan::String<seqan::MatchMateInfo_<long int, unsigned int>, seqan::Alloc<> >; TTag = seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24:   required from 'void seqan::_readImpl(TStreamOrReader&, seqan::FragmentStore<TSpec, TConfig>&, const TTag&, const seqan::FragStoreImportFlags&) [with TStreamOrReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TTag = seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18:   required from 'void seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Sam, const seqan::FragStoreImportFlags&) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Sam = const seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13:   required from 'void seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Sam) [with TFile = std::basic_fstream<char>; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Sam = const seqan::Tag<seqan::Sam_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6:   required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:23:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Segment<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::InfixSegment>, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
BUILDSTDERR:              case 'I':
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Nothing, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here
BUILDSTDERR:              case 'I':
BUILDSTDERR:              ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = seqan::String<seqan::CigarElement<> >; TGaps = seqan::Gaps<seqan::Nothing, seqan::AnchorGaps<seqan::String<seqan::GapAnchor<long int>, seqan::Alloc<> > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                  insertGaps(it, cigar[i].count);
BUILDSTDERR:                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here
BUILDSTDERR:              case 'D':
BUILDSTDERR:              ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Linking CXX executable ../../../bin/insegt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o  -o ../../../bin/insegt -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_sim
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:46:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11:   required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
[ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >; TValue = seqan::String<char, seqan::Alloc<> >; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::String<char, seqan::Alloc<> >; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<seqan::String<char, seqan::Alloc<> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35:
BUILDSTDERR: /usr/include/c++/8/new: In member function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String<char, seqan::Alloc<> >]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna_>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TValue = char; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = char]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:40:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28:   required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = const seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28:   required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment<const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TRng = seqan::Rng<seqan::MersenneTwister>; TCigarString = seqan::String<seqan::CigarElement<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:70:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from 'int seqan::readRegion(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from 'int seqan::readSequence(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/stdexcept:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX static library libmason_sim.a
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1
/usr/bin/ar qc libmason_sim.a  CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o
/usr/bin/ranlib libmason_sim.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_materializer
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function 'int MasonMaterializerApp::run()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=]
BUILDSTDERR:          catch (MasonIOException e)
BUILDSTDERR:                                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_materializer
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o  -o ../../../bin/mason_materializer -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_materializer
make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_methylation
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from 'int seqan::readRegion(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from 'int seqan::readSequence(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX executable ../../../bin/mason_methylation
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o  -o ../../../bin/mason_methylation -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_simulator
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = unsigned int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = unsigned int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11:   required from 'int seqan::readRegion(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22:   required from 'int seqan::readSequence(seqan::String<TValue, TSpec>&, const seqan::FaiIndex&, unsigned int) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:58:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/ext/new_allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/riscv64-redhat-linux/bits/c++allocator.h:33,
BUILDSTDERR:                  from /usr/include/c++/8/bits/allocator.h:46,
BUILDSTDERR:                  from /usr/include/c++/8/vector:61,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX executable ../../../bin/mason_simulator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o  -o ../../../bin/mason_simulator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_simulator
make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_splicing
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function 'int MasonSplicingApp::run()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=]
BUILDSTDERR:          catch (MasonIOException e)
BUILDSTDERR:                                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:42:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11:   required from 'void seqan::append(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:42:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 54%] Linking CXX executable ../../../bin/mason_splicing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o  -o ../../../bin/mason_splicing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_splicing
make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_frag_sequencing
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13:   required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:52:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 56%] Linking CXX executable ../../../bin/mason_frag_sequencing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o  -o ../../../bin/mason_frag_sequencing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_frag_sequencing
make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_variator
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const seqan::VcfRecord&, const seqan::VcfIOContext&, const Vcf&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      else
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:          streamWriteChar(stream, '\t');
BUILDSTDERR:          ^~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, const TValue2&, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = int; TValue2 = seqan::SimpleType<unsigned char, seqan::Dna5_>; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:48:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<StructuralVariantRecord>; TValue = StructuralVariantRecord; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = StructuralVariantRecord; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<StructuralVariantRecord>; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = StructuralVariantRecord; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<StructuralVariantRecord>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<StructuralVariantRecord>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const CharString&)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551504' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44:
BUILDSTDERR: /usr/include/c++/8/new: In member function 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const CharString&)':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 58%] Linking CXX executable ../../../bin/mason_variator
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o  -o ../../../bin/mason_variator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_variator
make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_genome
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 59%] Linking CXX executable ../../../bin/mason_genome
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o  -o ../../../bin/mason_genome -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_genome
make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color=
Scanning dependencies of target mason_tests
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<seqan::CigarElement<> >; TValue = seqan::CigarElement<>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = seqan::CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::CigarElement<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::CigarElement<>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::CigarElement<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<seqan::CigarElement<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'std::pair<int, int> appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22,
BUILDSTDERR:     inlined from 'std::pair<int, int> appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
BUILDSTDERR: /usr/include/c++/8/new: In function 'std::pair<int, int> appendOperation(TCigarString&, char)':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<unsigned int, seqan::Alloc<> >; TValue = unsigned int; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<unsigned int, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = unsigned int; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::IdManager<TIdType, TSpec> >::Type seqan::obtainId(seqan::IdManager<TIdType, TSpec>&) [with TIdType = unsigned int; TSpec = seqan::Tag<seqan::Default_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9,
BUILDSTDERR:     inlined from 'typename seqan::VertexDescriptor<seqan::Graph<seqan::Directed<TCargo, TSpec> > >::Type seqan::addVertex(seqan::Graph<seqan::Directed<TCargo, TSpec> >&) [with TCargo = void; TSpec = const seqan::Tag<seqan::WithoutEdgeId_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
BUILDSTDERR: /usr/include/c++/8/new: In function 'typename seqan::VertexDescriptor<seqan::Graph<seqan::Directed<TCargo, TSpec> > >::Type seqan::addVertex(seqan::Graph<seqan::Directed<TCargo, TSpec> >&) [with TCargo = void; TSpec = const seqan::Tag<seqan::WithoutEdgeId_>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Linking CXX executable ../../../bin/mason_tests
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o  -o ../../../bin/mason_tests -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color=
Scanning dependencies of target bam2roi
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
BUILDSTDERR:    ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     diff = (itGaps->gapPos - itGaps->seqPos);
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const seqan::String<TValue, TSpec>&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for (unsigned i = 0; i < length(mat); ++i)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   String<__int64> av;    // Average branch length to a combined node
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::StringSet<TSequence, TSpec>&, TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TString seq;
BUILDSTDERR:   ^~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TNames&, seqan::FastaAlign)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   String<TValue> mat;
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::String<TRightValue, TRightSpec>&, seqan::String<TSize2, TSpec2>&, const TStringSet&, const TNames&, MummerLib)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TName seq1;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, seqan::Graph<seqan::Tree<TCargo, TSpec> >&, TNames&, NewickFormat)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (atEnd(reader))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   TVertexDescriptor lastVertex = nilVertex;
BUILDSTDERR:   ^~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(seqan::FragmentStore<TSpec, TConfig>&, TGappedConsensus&, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:    for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i)
BUILDSTDERR:    ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     diff = (itGaps->gapPos - itGaps->seqPos);
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable ../../../bin/bam2roi
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o  -o ../../../bin/bam2roi -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color=
Scanning dependencies of target roi_plot_thumbnails
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Linking CXX executable ../../../bin/roi_plot_thumbnails
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o  -o ../../../bin/roi_plot_thumbnails -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target roi_plot_thumbnails
make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color=
Scanning dependencies of target roi_feature_projection
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Linking CXX executable ../../../bin/roi_feature_projection
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o  -o ../../../bin/roi_feature_projection -lrt -L/usr/lib64 -lz 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color=
Scanning dependencies of target param_chooser
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (skipWhitespaces(reader) != 0)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   int kickout = 0;
BUILDSTDERR:   ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (pm_options.verbose)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   resize(avg,pm_options.totalN,(TFloat)0.0);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions<TSpec>&, TFile&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (value(reader) == 'e')
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   bool atLeastOneFound = false;
BUILDSTDERR:   ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:44:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadIDs = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TDistr = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16:   required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadIDs = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TDistr = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<float>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<float>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9:   required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, seqan::RazerSOptions<TSpec>&, const TShape&, seqan::Swift<TSwiftSpec>) [with TMatches = seqan::String<seqan::ReadMatch<int> >; TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TCounts = int; TSpec = seqan::RazerSSpec<false, true>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24:   required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, seqan::RazerSOptions<TSpec>&, const TShape&, seqan::Swift<TSwiftSpec>) [with TMatches = seqan::String<seqan::ReadMatch<int> >; TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TCounts = int; TSpec = seqan::RazerSSpec<false, true>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::UngappedShape<0> >; TSwiftSpec = seqan::Tag<seqan::SwiftSemiGlobal_<seqan::Hamming_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19:   required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, seqan::RazerSOptions<TSpec>&) [with TMatches = seqan::String<seqan::ReadMatch<int> >; TGenomeSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TReadSet = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Owner<seqan::ConcatDirect<void> > >; TReadRegions = int; TCounts = int; TSpec = seqan::RazerSSpec<false, true>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<float>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:43:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::HammingDistance_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:6: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:       ++del;
BUILDSTDERR:       ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:5: note: here
BUILDSTDERR:      case SEQAN_INSERT:
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:6: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:       ++del;
BUILDSTDERR:       ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:5: note: here
BUILDSTDERR:      case SEQAN_INSERT:
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::LevenshteinDistance_>, float>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<float>; TDistance = seqan::Tag<seqan::LevenshteinDistance_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:6: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:       ++del;
BUILDSTDERR:       ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:5: note: here
BUILDSTDERR:      case SEQAN_INSERT:
BUILDSTDERR:      ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:6: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:       ++del;
BUILDSTDERR:       ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:5: note: here
BUILDSTDERR:      case SEQAN_INSERT:
BUILDSTDERR:      ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 69%] Linking CXX executable ../../../bin/param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o  -o ../../../bin/param_chooser -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color=
Scanning dependencies of target test_funcs_param_chooser
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (skipWhitespaces(reader) != 0)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   int kickout = 0;
BUILDSTDERR:   ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (pm_options.verbose)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   resize(avg,pm_options.totalN,(TFloat)0.0);
BUILDSTDERR:   ^~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(seqan::RazerSOptions<TSpec>&, TFile&, seqan::ParamChooserOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (value(reader) == 'e')
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   bool atLeastOneFound = false;
BUILDSTDERR:   ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:44:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/sstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable ../../../bin/test_funcs_param_chooser
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o  -o ../../../bin/test_funcs_param_chooser 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color=
Scanning dependencies of target razers3_simulate_reads
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14:   required from 'bool seqan::loadContigs(seqan::FragmentStore<TSpec, TConfig>&, const seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20:   required from 'bool seqan::loadContigs(seqan::FragmentStore<TSpec, TConfig>&, const CharString&, bool) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20:   required from 'bool seqan::loadContigs(seqan::FragmentStore<TSpec, TConfig>&, const TFileNames&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TFileNames = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:56:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 72%] Linking CXX executable ../../../bin/razers3_simulate_reads
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o  -o ../../../bin/razers3_simulate_reads -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3_simulate_reads
make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color=
Scanning dependencies of target razers3
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TSize = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type seqan::appendMatePair(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TMatePairStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23:   required from 'int mapReads(seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:66:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16:   required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_> >; TPosition = int; TValue = seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16:   required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = seqan::String<seqan::SensitivityDPState_<seqan::Tag<seqan::HammingDistance_>, double>, seqan::Alloc<> >; TShape = seqan::String<char, seqan::Alloc<> >; TLogErrorDistr = seqan::String<double>; TDistance = seqan::Tag<seqan::HammingDistance_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14:   required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = seqan::String<double>; TShape = seqan::Shape<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::GappedShape<seqan::Tag<seqan::Default_> > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = seqan::Tag<seqan::HammingDistance_>; TErrorDist = seqan::String<double>; seqan::ThreshExact = const seqan::Tag<seqan::ThreshExact_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42:   required from 'void seqan::makeSelectedStatsFile(TError&, seqan::ParamChooserOptions&) [with TError = seqan::String<double>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30:   required from 'bool seqan::chooseParams(seqan::RazerSOptions<TSpec>&, seqan::ParamChooserOptions&) [with TSpec = seqan::RazerSSpec<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:50:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::ErrorAlphabet_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp
[ 74%] Linking CXX executable ../../../bin/razers3
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o  -o ../../../bin/razers3 -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3
make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color=
Scanning dependencies of target razers3_quality2prob
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45:   required from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize = long int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18:   required from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSize = long int; typename seqan::Size<T>::Type = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9:   required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, seqan::Fastq) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFastaSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; seqan::Fastq = seqan::Tag<seqan::TagFastq_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13:   required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const seqan::TagSelector<TTagList>&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFileSeq = seqan::Segment<seqan::String<char, seqan::MMap<> >, seqan::InfixSegment>; TTagList = seqan::TagList<seqan::Tag<seqan::TagFastq_>, seqan::TagList<seqan::Tag<seqan::TagFasta_>, seqan::TagList<seqan::Tag<seqan::TagRaw_> > > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:47:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, const CharString&) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19:   required from 'bool seqan::loadReads(seqan::FragmentStore<TSpec, TConfig>&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = seqan::FragmentStoreConfig<void>; TRazerSOptions = seqan::RazerSOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:74:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/istream:38,
BUILDSTDERR:                  from /usr/include/c++/8/fstream:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable ../../../bin/razers3_quality2prob
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o  -o ../../../bin/razers3_quality2prob -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color=
Scanning dependencies of target rep_sep
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27:   required from 'void parseContig(const seqan::FragmentStore<TSpec, TConfig>&, TId, seqan::String<TEmission>&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TId = int; TAnnotatedCandidateColumn = seqan::Pair<long unsigned int, seqan::String<seqan::Triple<char, unsigned int, long unsigned int> > >; TScannerType = SimpleColumn]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:64:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from 'int seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Amos = const seqan::Tag<seqan::TagAmos_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:38:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   required from 'static void seqan::AppendString_<TExpand>::append_(TTarget&, TSource&) [with TTarget = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSource = const seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42:   required from 'void seqan::append(seqan::String<TValue, TSpec>&, const TSource&, seqan::Tag<TUsage>) [with TTargetValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TTargetSpec = seqan::Alloc<>; TSource = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<seqan::ConcatDirect<void> > >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13:   required from 'typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type seqan::appendRead(seqan::FragmentStore<TSpec, TConfig>&, const TRead&, TId) [with TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; TRead = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TId = unsigned int; typename seqan::Size<typename seqan::FragmentStore<TSpec, TConfig>::TReadStore>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15:   required from 'int seqan::read(TFile&, seqan::FragmentStore<TSpec, TConfig>&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = seqan::FragmentStoreConfig<void>; seqan::Amos = const seqan::Tag<seqan::TagAmos_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:38:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable ../../../bin/rep_sep
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o  -o ../../../bin/rep_sep -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color=
Scanning dependencies of target join
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TValue = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from 'bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from 'bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from 'bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TValue = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from 'bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from 'bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from 'bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from 'void seqan::create(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&, TValue2&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TValue2 = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from 'void seqan::create(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from 'typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>&]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:68:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:87:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = void; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, seqan::Tag<Join_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12:   required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:88:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 79%] Linking CXX executable ../../../bin/join
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o  -o ../../../bin/join -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target join
make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color=
Scanning dependencies of target search
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TValue = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from 'bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from 'bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from 'bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TValue = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16:   required from 'bool _parseText(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50:   required from 'bool parseLine(DbParser<TDb, TSpec>&, TReader&) [with TDb = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>; TSpec = void; TReader = seqan::RecordReader<std::basic_fstream<char>, seqan::SinglePass<void> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23:   required from 'bool load(Db<TText, TSpec>&, const TFileName&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = void; TFileName = seqan::String<char, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<seqan::Tag<StringOfMaxSize256_> >; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42:   required from 'void seqan::create(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&, TValue2&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >; TValue2 = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19:   required from 'void seqan::create(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from 'typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >; typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type = Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >&]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45:   required from 'void execute(DbFinder<TText, TIndex, seqan::Tag<Query_>, TDelegate, seqan::Tag<Online_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Nothing; TSpec = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:81:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Tag<seqan::Parallel_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:97:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<HugeDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<HugeDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<HugeDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:95:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; T2 = seqan::Tuple<unsigned int, 3, void>; T3 = seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::String<unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::IndexSa<seqan::Tag<SmallDb_> >; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17:   required from 'void seqan::_indexRequireTopDownIteration(seqan::Index<TText, seqan::IndexSa<TSpec> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndexSpec = seqan::Tag<SmallDb_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33:   required from 'seqan::Iter<TIndex, seqan::VSTree<seqan::TopDown<TSpec> > >::Iter(TIndex&) [with TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TSpec = seqan::Preorder]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23:   required from 'void execute(DbFinder<TText, TIndex, TDbQuerySpec, TDelegate, seqan::Tag<seqan::Parallel_> >&) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; TDbQuerySpec = seqan::Tag<Query_>; TDelegate = Writer<Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, void>, Db<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::Tag<Query_> >, seqan::Tag<Search_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12:   required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >; TSpec = seqan::Tag<seqan::Parallel_>; TIndex = seqan::Index<seqan::StringSet<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Owner<seqan::ConcatDirect<void> > >, seqan::IndexSa<seqan::Tag<SmallDb_> > >; Online = seqan::Tag<Online_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:96:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, BitPacked<BITSIZE1, BITSIZE2> >
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<unsigned int, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::Tag<seqan::Pack_> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::String<char, seqan::Alloc<seqan::Tag<StringOfMaxSize256_> > >, seqan::Source<> >, seqan::Caster<unsigned char, seqan::CasterReinterpret> >; TLimitsString = seqan::String<unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<unsigned int, unsigned int, seqan::Tag<seqan::Pack_> >, unsigned int>, unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<unsigned int, unsigned char, seqan::BitPacked<24, 8> >, seqan::Tuple<unsigned int, 3, void>, seqan::Tuple<unsigned char, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 80%] Linking CXX executable ../../../bin/search
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o  -o ../../../bin/search -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target search
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color=
Scanning dependencies of target test_sflex_adapter
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15:   required from 'void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15:   required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15:   required from 'typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type seqan::value(seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> >&) [with TValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Reference<seqan::Holder<TValue, seqan::Tag<seqan::Tristate_> > >::Type = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >&]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17:   required from 'typename seqan::Source<seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> > >::Type& seqan::source(seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> >&) [with TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; typename seqan::Source<seqan::Gaps<TSequence, seqan::Tag<seqan::ArrayGaps_> > >::Type = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22:   required from 'unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26:   required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TAdapter = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSpec = Auto]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28:   required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 82%] Linking CXX executable ../../../bin/test_sflex_adapter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o  -o ../../../bin/test_sflex_adapter -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_adapter
make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color=
Scanning dependencies of target seqan_flexlib
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function 'seqan::ArgumentParser initParser()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
BUILDSTDERR:      std::auto_ptr<ArgumentParserBuilder> argParseBuilder;
BUILDSTDERR:           ^~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/locale_conv.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/locale:43,
BUILDSTDERR:                  from /usr/include/c++/8/iomanip:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:47,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here
BUILDSTDERR:    template<typename> class auto_ptr;
BUILDSTDERR:                             ^~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:13:   required from 'int seqan::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, seqan::SequenceStream&, unsigned int) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:55:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:13:   required from 'int seqan::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:68:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2656:59:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet<TSequence, TSpec>&, const TAlgSpec&, seqan::True) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet<TSequence, TSpec>&, const TAlgSpec&, seqan::True) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna5_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37:   required from 'void seqan::_createSuffixArrayWrapper(TSA&, const seqan::StringSet<TSequence, TSpec>&, const TAlgSpec&, seqan::True) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TSetSpec = seqan::Owner<>; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22:   required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >; TMulti = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24:   required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2656:59:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Linking CXX static library libseqan_flexlib.a
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -P CMakeFiles/seqan_flexlib.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1
/usr/bin/ar qc libseqan_flexlib.a  CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o
/usr/bin/ranlib libseqan_flexlib.a
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target seqan_flexlib
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color=
Scanning dependencies of target test_sflex_general_processing
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22:   required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TIds = seqan::StringSet<seqan::String<char, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12:   required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = char [31]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<> >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> >; TString2 = char [31]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5_>, seqan::Alloc<> > >; TValue = char [31]]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16:   required from 'void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TTargetSpec = seqan::Alloc<>; TValue = char [7]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<> >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TString2 = char [7]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TValue = char [7]]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16:   required from 'void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31:   required from 'static void seqan::AppendValueToString_<TExpand>::appendValue_(T&, TValue&) [with T = seqan::String<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag<seqan::TagGenerous_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54:   required from 'void seqan::appendValue(seqan::String<TValue, TSpec>&, const TValue&, seqan::Tag<TUsage>) [with TTargetValue = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TTargetSpec = seqan::Alloc<>; TValue = char [11]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16:   required from 'void seqan::appendValue(seqan::StringSet<TString, seqan::Owner<> >&, const TString2&, seqan::Tag<TExpand>) [with TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TString2 = char [11]; TExpand = seqan::TagGenerous_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16:   required from 'void seqan::appendValue(T&, const TValue&) [with T = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TValue = char [11]]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16:   required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
[ 85%] Linking CXX executable ../../../bin/test_sflex_general_processing
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o  -o ../../../bin/test_sflex_general_processing -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_general_processing
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color=
Scanning dependencies of target test_sflex_demultiplex
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::KasaiOriginal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[isa - 1] = h;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const seqan::StringSet<TSequence, TSpec>&, const TSA&, seqan::Kasai)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:                  for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ;
BUILDSTDERR:                  ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:      LCP[i] = h | mark;
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(seqan::Index<TObject, seqan::IndexWotd<seqan::Dfi<TPredHull, TPred> > >&, TSize, TSize)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:6: warning: this 'else' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:     } else
BUILDSTDERR:       ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else'
BUILDSTDERR:      for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d)
BUILDSTDERR:      ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator<TLeft, const seqan::Tag<seqan::Standard_> >::Type seqan::_upperBoundLcpe(TText&, TSA&, seqan::SearchTreeIterator<TLCP, TSpec>, TQuery&, TDiff_, TDiff_)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:              for(; i && ordEqual(*t, convert<TTextAlphabet>(*q)); --i, ++t, ++q) ;
BUILDSTDERR:              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:     if (q == qEnd || t == tEnd || !ordGreater(*t, convert<TTextAlphabet>(*q))) {
BUILDSTDERR:     ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13:   required from 'void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49:   required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, unsigned int, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:13:   required from 'int seqan::readBatch(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, seqan::SequenceStream&, unsigned int) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSeqSpec = seqan::Owner<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:45:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49:   required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:13:   required from 'int seqan::readAll(seqan::StringSet<TString, TSpec>&, seqan::StringSet<TSequence, TSpec>&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TIdSpec = seqan::Owner<>; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:34:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from 'void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = int; TEndPosition = unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9:   required from 'void clipBarcodes(TSeqs&, const seqan::String<int>&, unsigned int) [with TSeqs = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14:   required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, T3, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T3 = seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14:   required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 6; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 4; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::_copy(seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream&, const seqan::Triple<T1, T2, seqan::Tuple<T, SIZE, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >&) [with T1 = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; T2 = seqan::Tuple<long unsigned int, 3, void>; T = seqan::SimpleType<unsigned char, seqan::Dna_>; unsigned int SIZE = 5; TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::TSkewDCStream = seqan::SkewDCStream<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> > >; typename seqan::Value<TIterator>::Type = seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11:   required from 'void seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::insertStream(unsigned int) [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4:   required from 'seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >& seqan::Pipe<seqan::Bundle5<TIn1, TIn2, TIn3, TIn4, TIn5>, seqan::Merger7Multi<TLimitsString> >::operator++() [with TInput0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TInput124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13:   required from 'seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >& seqan::Pipe<TInput, seqan::Multi<seqan::Skew7, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TPair_ = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108:   required from 'void seqan::assign(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15:   required from 'void seqan::operator<<(seqan::String<TValue, TSpec>&, seqan::Pipe<TInput, TSpec>&) [with TValue = seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >; TStringSpec = seqan::Alloc<>; TInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TSpec = seqan::Multi<seqan::Skew7, seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::String<long unsigned int, seqan::Alloc<> > >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34:   required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = seqan::String<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Alloc<> >; TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TAlgSpec = seqan::Skew7]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, FibreSA, TSpecAlg) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TSpecAlg = seqan::Skew7; seqan::FibreSA = const seqan::Tag<seqan::FibreSA_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27:   required from 'bool seqan::indexCreate(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21:   required from 'bool seqan::indexRequire(seqan::Index<TObject, TSpec>&, seqan::Tag<TExpand>) [with TText = seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > >; TSpec = seqan::IndexEsa<>; TFibre = seqan::FibreSA_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14:   required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:              memcpy(&dst.i.i1, &src.i1, sizeof(T1));
BUILDSTDERR:              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >' declared here
BUILDSTDERR:  struct Pair<T1, T2, Pack>
BUILDSTDERR:         ^~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >, seqan::Filter<seqan::filterI2<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int> > >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapLinear<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<long unsigned int, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<long unsigned int, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:111: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p--;
BUILDSTDERR:                                                                                                                ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here
BUILDSTDERR:          case 5:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:112: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p--;
BUILDSTDERR:                                                                                                                 ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here
BUILDSTDERR:          case 4:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                                       cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                                                        ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here
BUILDSTDERR:          case 3:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:113: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:  /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p--;
BUILDSTDERR:                                                                                                                  ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here
BUILDSTDERR:          case 2:
BUILDSTDERR:          ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                                 cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                                          ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here
BUILDSTDERR:          case 1:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 4, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 5, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, 6, seqan::Tag<seqan::Pack_> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = seqan::Pipe<seqan::Pipe<seqan::ConcatenatorManyToOne<seqan::StringSet<seqan::String<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster<seqan::SimpleType<unsigned char, seqan::Dna_>, seqan::CasterReinterpret> >; TLimitsString = seqan::String<long unsigned int, seqan::Alloc<> >; TNameInput = seqan::Pool<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::filterI1<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut0 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 3, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut3 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut5 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 4, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 1, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut6 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::SorterSpec<seqan::SorterConfigSize<seqan::_skew7ExtendComp<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 5, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, 2, int>, long unsigned int, seqan::File<seqan::Async<> > > > >; TOut124 = seqan::Pool<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, seqan::MapperSpec<seqan::MapperConfigSize<seqan::_skew7NMapExtended<seqan::Triple<seqan::Pair<long unsigned int, long unsigned int, seqan::Tag<seqan::Pack_> >, seqan::Tuple<long unsigned int, 3, void>, seqan::Tuple<seqan::SimpleType<unsigned char, seqan::Dna_>, 6, seqan::BitPacked<> >, seqan::Tag<seqan::Pack_> >, long unsigned int>, long unsigned int, seqan::File<seqan::Async<> > > > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:123: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 6 */                                                                    cp___(o6,0,    *textIn); ++textIn; o6.i1 = p; ++p;
BUILDSTDERR:                                                                                                                            ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:4: note: here
BUILDSTDERR:     case 5:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:124: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 5 */                                                         cp___(o5,0,cp___(o6,1,    *textIn)); ++textIn; o5.i1 = p; ++p;
BUILDSTDERR:                                                                                                                             ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:4: note: here
BUILDSTDERR:     case 4:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:64: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:                cp___(o4,0,cp___(o5,1,cp___(o6,2,    *textIn))); ++textIn;
BUILDSTDERR:                                                                 ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:4: note: here
BUILDSTDERR:     case 3:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:125: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:   /* 3 */                                   cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3,   *textIn)))); ++textIn; o3.i1 = p; ++p;
BUILDSTDERR:                                                                                                                              ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:4: note: here
BUILDSTDERR:     case 2:
BUILDSTDERR:     ^~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:82: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:          cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4,    *textIn))))); ++textIn;
BUILDSTDERR:                                                                                   ^~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:4: note: here
BUILDSTDERR:     case 1:
BUILDSTDERR:     ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 87%] Linking CXX executable ../../../bin/test_sflex_demultiplex
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o  -o ../../../bin/test_sflex_demultiplex -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_demultiplex
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color=
Scanning dependencies of target sflexFilter
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 88%] Linking CXX executable ../../../bin/sflexFilter
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o  -o ../../../bin/sflexFilter libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Built target sflexFilter
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color=
Scanning dependencies of target sflexAR
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 90%] Linking CXX executable ../../../bin/sflexAR
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o  -o ../../../bin/sflexAR libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexAR
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color=
Scanning dependencies of target sflexDMulti
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 91%] Linking CXX executable ../../../bin/sflexDMulti
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o  -o ../../../bin/sflexDMulti libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexDMulti
make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color=
Scanning dependencies of target seqan_flexbar
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 93%] Linking CXX executable ../../../bin/seqan_flexbar
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o  -o ../../../bin/seqan_flexbar libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target seqan_flexbar
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color=
Scanning dependencies of target test_sflex_trimming
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const seqan::String<TValue, TSpec>&, const seqan::String<TValue2, TSpec2>&, const MyersBitVector&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (length(seqH) < length(seqV))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   const unsigned int BLOCK_SIZE = BitsPerValue<unsigned int>::VALUE;
BUILDSTDERR:   ^~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair<seqan::Pair<TDiagonal> > seqan::_alignBandedSmithWatermanTrace(seqan::LocalAlignmentFinder<TScoreValue>&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if ((actualCol == 0) || (actualRow == 0))
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal);
BUILDSTDERR:   ^~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, const TScore&, const TShrinkMatches&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if (alignQualityStoreLengthPre == 0u)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   sortAlignedReads(store.alignedReadStore, SortBeginPos());
BUILDSTDERR:   ^~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize_ = unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12:   required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, seqan::RecordReader<TFile, seqan::DoublePass<TSpec> >&, const TTag&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TSpec = seqan::Tag<seqan::StringReader_>; TTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37:   required from 'int seqan::readRecord(TIdString&, TSeqString&, seqan::RecordReader<TFile, TPass>&, const Fasta&) [with TIdString = seqan::String<char, seqan::Alloc<> >; TSeqString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFile = seqan::String<char, seqan::MMap<> >; TPass = seqan::DoublePass<seqan::Tag<seqan::StringReader_> >; seqan::Fasta = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40:   required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TFormatTag = seqan::Tag<seqan::TagFasta_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:13:   required from 'int seqan::readRecord(TId&, TSequence&, seqan::SequenceStream&) [with TId = seqan::String<char, seqan::Alloc<> >; TSequence = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24:   required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29:   required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21:   required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31:   required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31:   required from 'static typename seqan::Size<T>::Type seqan::ClearSpaceExpandStringBase_<TExpand>::_clearSpace_(T&, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type, typename seqan::Size<T>::Type) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TExpand = seqan::Tag<seqan::TagGenerous_>; typename seqan::Size<T>::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::_clearSpace(seqan::String<TValue, TSpec>&, TSize, TPosition, TPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30:   required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26:   required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource1 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*; TSource2 = seqan::SimpleType<unsigned char, seqan::Dna5Q_>*]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14:   required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const seqan::True&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28:   required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; size_t = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28:   [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resizeSpace(seqan::String<TValue, TSpec>&, TSize, TBeginPosition, TEndPosition, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5Q_>; TSpec = seqan::Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = seqan::TagGenerous_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23:   required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16:   required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7:   required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_> >; TSpec = Mean]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27:   required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5Q_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
BUILDSTDERR:              _fileFormat = this->_checkFormat(*_istreamReader);
BUILDSTDERR:              ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here
BUILDSTDERR:          case SeqIOFileType_::FILE_TYPE_AUTO:
BUILDSTDERR:          ^~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = seqan::String<char, seqan::Alloc<> >; TSourceIter = seqan::Iter<const seqan::String<char, seqan::Alloc<> >, seqan::AdaptorIterator<const char*, seqan::Tag<seqan::Default_> > >]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:33: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=]
BUILDSTDERR:              snprintf(buffer, 4, "%d", x);
BUILDSTDERR:                                  ^~~~
BUILDSTDERR: In file included from /usr/include/stdio.h:873,
BUILDSTDERR:                  from /usr/include/c++/8/cstdio:42,
BUILDSTDERR:                  from /usr/include/c++/8/ext/string_conversions.h:43,
BUILDSTDERR:                  from /usr/include/c++/8/bits/basic_string.h:6400,
BUILDSTDERR:                  from /usr/include/c++/8/string:52,
BUILDSTDERR:                  from /usr/include/c++/8/bits/locale_classes.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/bits/ios_base.h:41,
BUILDSTDERR:                  from /usr/include/c++/8/ios:42,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46:
BUILDSTDERR: /usr/include/bits/stdio2.h:67:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4
BUILDSTDERR:    return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
BUILDSTDERR:           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR:         __bos (__s), __fmt, __va_arg_pack ());
BUILDSTDERR:         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 95%] Linking CXX executable ../../../bin/test_sflex_trimming
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o  -o ../../../bin/test_sflex_trimming -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target test_sflex_trimming
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color=
Scanning dependencies of target sflexQC
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++  -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp
[ 96%] Linking CXX executable ../../../bin/sflexQC
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o  -o ../../../bin/sflexQC libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
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make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color=
Scanning dependencies of target sgip
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[ 98%] Linking CXX executable ../../../bin/sgip
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o  -o ../../../bin/sgip -lrt 
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color=
Scanning dependencies of target variant_comp
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/c++  -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0   -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits]
BUILDSTDERR:      if (c == EOF)
BUILDSTDERR:            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      if(options.genotypeAware && predIndel.genotype != refIndel.genotype)
BUILDSTDERR:      ^~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
BUILDSTDERR:   int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance);
BUILDSTDERR:   ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
BUILDSTDERR:      for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it)
BUILDSTDERR:      ^~~
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
BUILDSTDERR:   for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it)
BUILDSTDERR:   ^~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]':
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29:   required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21:   required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, seqan::True) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31:   required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = seqan::SimpleType<unsigned char, seqan::Dna5_>; TValueTarget = seqan::SimpleType<unsigned char, seqan::Dna5_>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27:   required from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20:   required from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size<seqan::String<TValue, TSpec> >::Type = long unsigned int]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16:   required from 'seqan::String<TValue, seqan::Alloc<TSpec> >::String(const seqan::String<TValue, seqan::Alloc<TSpec> >&) [with TValue = seqan::SimpleType<unsigned char, seqan::Dna5_>; TSpec = void]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:10:   required from 'int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet<seqan::IndelInfo>; TSnpSet = seqan::StringSet<seqan::SnpInfo>; TGenomeMap = std::map<seqan::String<char, seqan::Alloc<> >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]'
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:100:   required from here
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
BUILDSTDERR:      ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue));
BUILDSTDERR:      ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType<unsigned char, seqan::Dna5_>' declared here
BUILDSTDERR:  class SimpleType
BUILDSTDERR:        ^~~~~~~~~~
BUILDSTDERR: In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29:
BUILDSTDERR: In function 'void seqan::allocate(T&, TValue*&, TSize, const seqan::Tag<TUsage>&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TValue = std::__cxx11::basic_string<char>; TSize = long unsigned int; TUsage = seqan::AllocateStorage_]',
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, seqan::Alloc<TSpec> > >::Type* seqan::_allocateStorage(seqan::String<TValue, seqan::Alloc<TSpec> >&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28,
BUILDSTDERR:     inlined from 'typename seqan::Value<seqan::String<TValue, TSpec> >::Type* seqan::_reallocateStorage(seqan::String<TValue, TSpec>&, TSize, seqan::Generous) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83,
BUILDSTDERR:     inlined from 'void seqan::_reserveStorage(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::reserve(seqan::String<TValue, TSpec>&, TSize_, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize_ = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20,
BUILDSTDERR:     inlined from 'static typename seqan::Size<T>::Type seqan::_Resize_String<TExpand>::resize_(T&, typename seqan::Size<T>::Type) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TExpand = seqan::Tag<seqan::TagGenerous_>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45,
BUILDSTDERR:     inlined from 'typename seqan::Size<seqan::String<TValue, TSpec> >::Type seqan::resize(seqan::String<TValue, TSpec>&, TSize, seqan::Tag<TUsage>) [with TValue = std::__cxx11::basic_string<char>; TSpec = seqan::Alloc<>; TSize = long unsigned int; TExpand = seqan::TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50,
BUILDSTDERR:     inlined from 'typename seqan::Size<T>::Type seqan::resize(T&, TSize) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18,
BUILDSTDERR:     inlined from 'void seqan::eraseBack(T&) [with T = seqan::String<std::__cxx11::basic_string<char>, seqan::Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8,
BUILDSTDERR:     inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30:
BUILDSTDERR: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
BUILDSTDERR:  */  data = (TValue *) operator new(count * sizeof(TValue));
BUILDSTDERR:                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/include/c++/8/bits/exception_ptr.h:40,
BUILDSTDERR:                  from /usr/include/c++/8/exception:143,
BUILDSTDERR:                  from /usr/include/c++/8/ios:39,
BUILDSTDERR:                  from /usr/include/c++/8/ostream:38,
BUILDSTDERR:                  from /usr/include/c++/8/iostream:39,
BUILDSTDERR:                  from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22:
BUILDSTDERR: /usr/include/c++/8/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string<char>]':
BUILDSTDERR: /usr/include/c++/8/new:120:7: note: in a call to allocation function 'void* operator new(std::size_t)' declared here
BUILDSTDERR:  void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc)
BUILDSTDERR:        ^~~~~~~~
[100%] Linking CXX executable ../../../bin/variant_comp
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0  -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o  -o ../../../bin/variant_comp -lrt 
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+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.52z7Mi
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+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64
+ cd seqan-1.4.2
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64 'INSTALL=/usr/bin/install -p' -C build/Release 'INSTALL=install -p'
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/usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  9%] Built target micro_razers
/usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 11%] Built target pair_align
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 12%] Built target rabema_build_gold_standard
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 14%] Built target rabema_prepare_sam
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_evaluate
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 16%] Built target rabema_do_search
/usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 19%] Built target razers
/usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 20%] Built target razers2
/usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 22%] Built target sak
/usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 24%] Built target sam2matrix
/usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target samcat
/usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 25%] Built target seqan_tcoffee
/usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 27%] Built target seqcons
/usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target snp_store
/usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 29%] Built target splazers
/usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 30%] Built target stellar
/usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target tree_recon
/usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target seqan_extras
/usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target alf
/usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 32%] Built target breakpoint_calculator
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 33%] Built target casbar
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 35%] Built target bisar
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target four2three
/usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 37%] Built target fx_fastq_stats
/usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 38%] Built target fx_bam_coverage
/usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 40%] Built target gustaf
/usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 41%] Built target insegt
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target mason_sim
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_materializer
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 51%] Built target mason_methylation
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 53%] Built target mason_simulator
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 54%] Built target mason_splicing
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 56%] Built target mason_frag_sequencing
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 58%] Built target mason_variator
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 59%] Built target mason_genome
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 61%] Built target mason_tests
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target bam2roi
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 64%] Built target roi_plot_thumbnails
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 67%] Built target roi_feature_projection
/usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 69%] Built target param_chooser
/usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 70%] Built target test_funcs_param_chooser
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 72%] Built target razers3_simulate_reads
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 74%] Built target razers3
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 75%] Built target razers3_quality2prob
/usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 77%] Built target rep_sep
/usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 79%] Built target join
/usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 80%] Built target search
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 82%] Built target test_sflex_adapter
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 83%] Built target seqan_flexlib
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 85%] Built target test_sflex_general_processing
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 87%] Built target test_sflex_demultiplex
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 88%] Built target sflexFilter
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 90%] Built target sflexAR
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 91%] Built target sflexDMulti
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 93%] Built target seqan_flexbar
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 95%] Built target test_sflex_trimming
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 96%] Built target sflexQC
/usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 98%] Built target sgip
/usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build
make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target variant_comp
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
/usr/bin/make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/dfi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/dfi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/dfi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/dfi/example/fasta1.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/dfi/example/fasta2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fiona
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/compute_gain
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fiona/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fiona/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fiona/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/micro_razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/pair_align
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/pair_align/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/pair_align/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_prepare_sam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_build_gold_standard
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_evaluate
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_prepare_sam
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_build_gold_standard
-- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_evaluate
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rabema/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rabema/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers2
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2/example/reads2.fa
gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc
gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2
/usr/bin/gmake -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all
gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color=
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[  0%] Built target seqan_core
/usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color=
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'.
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[ 50%] Built target sak
/usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color=
Scanning dependencies of target sak_doc
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build
gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Generating README.sak.txt
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt
[100%] Generating sak.1
cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1
gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
[100%] Built target sak_doc
gmake[3]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0
gmake[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
gmake[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sak
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sak/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sak/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sak/README.sak.txt
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sak/man/sak.1
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sam2matrix
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sam2matrix/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sam2matrix/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/samcat
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/samcat/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/samcat/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_tcoffee
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_tcoffee/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_tcoffee/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_tcoffee/example/seq.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqcons
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqcons/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqcons/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/snp_store
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/snp_store/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/snp_store/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/snp_store/example/exampleGenome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/snp_store/example/exampleReads.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/splazers
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers/example/reads.fa.result
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/stellar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar/example/NC_001474.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar/example/NC_001477.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar/example/reads.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/tree_recon
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/tree_recon/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/tree_recon/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/tree_recon/example/example.dist
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/alf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/alf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/alf/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/alf/example/small.fasta
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/breakpoint_calculator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/breakpoint_calculator/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/breakpoint_calculator/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/breakpoint_calculator/example/alignment.maf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bisar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/casbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/four2three
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/bs_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/bs_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fx_bam_coverage
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fx_tools/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fx_tools/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/gustaf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/example/adeno.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/example/adeno_modified.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/example/adeno_modified_reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf/example/stellar.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/insegt
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/example/annoOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/example/annotations.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/example/readOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt/example/tupleOutput.gff
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_genome
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_frag_sequencing
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_variator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_materializer
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_simulator
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason2/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason2/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason2/example/adeno_virus.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bam2roi
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_feature_projection
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_plot_thumbnails
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bed_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/gff_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_sort.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_plot_9.sh
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/plot.awk
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/ps2pswLinks.gawk
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/example/dmel.bed
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/example/dmel.gtf
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/example/example.bam
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi/R/ngsroi_0.1.zip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/param_chooser
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/param_chooser/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/param_chooser/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers3
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3/example/genome.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3/example/reads.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3/example/reads2.fa
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rep_sep
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rep_sep/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rep_sep/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/join
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/searchjoin/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/searchjoin/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_flexbar
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_flexbar/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_flexbar/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sgip
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/README
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/iso_r01_m200.A00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/latin-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/lattice-4
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip/example/sts-7
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/variant_comp
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/variant_comp/LICENSE
-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/variant_comp/README
make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release'
+ mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/include/seqan
+ cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/include/seqan
+ cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/include/seqan
+ mkdir -p seqandoc
+ cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan/variant_comp seqandoc
+ rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan
+ rm -f 'seqandoc/*.txt'
+ mv /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/searchjoin
BUILDSTDERR: ++ find /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin -perm /644 -type f '(' -name '*.sh' ')'
+ for i in `find /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin -perm /644 -type f \( -name "*.sh" \)`
+ chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/gff_sort.sh
+ for i in `find /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin -perm /644 -type f \( -name "*.sh" \)`
+ chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_plot_9.sh
+ for i in `find /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin -perm /644 -type f \( -name "*.sh" \)`
+ chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_sort.sh
+ for i in `find /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin -perm /644 -type f \( -name "*.sh" \)`
+ chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bed_sort.sh
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.4.2-37.fc30 --unique-debug-suffix -1.4.2-37.fc30.riscv64 --unique-debug-src-base seqan-1.4.2-37.fc30.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/gustaf
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_flexbar
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_flexbar
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/gustaf
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bisar
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bisar
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/pair_align
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/pair_align
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/four2three
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/four2three
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rep_sep
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rep_sep
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/splazers
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/splazers
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/param_chooser
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/param_chooser
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/tree_recon
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/tree_recon
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers2
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers2
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/compute_gain
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/compute_gain
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_materializer
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_materializer
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_prepare_sam
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_prepare_sam
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_plot_thumbnails
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_plot_thumbnails
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sam2matrix
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sam2matrix
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/casbar
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/casbar
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_feature_projection
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/roi_feature_projection
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_simulator
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_simulator
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers3
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers3
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_tcoffee
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqan_tcoffee
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/micro_razers
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/micro_razers
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/stellar
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/stellar
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/razers
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/samcat
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/samcat
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/insegt
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/insegt
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/snp_store
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/snp_store
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_evaluate
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_evaluate
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sak
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sak
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_frag_sequencing
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_frag_sequencing
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/dfi
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/dfi
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_variator
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_variator
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/searchjoin
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/searchjoin
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/alf
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/alf
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sgip
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/sgip
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_genome
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/mason_genome
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fx_bam_coverage
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fx_bam_coverage
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/variant_comp
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/variant_comp
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/breakpoint_calculator
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/breakpoint_calculator
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqcons
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/seqcons
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_build_gold_standard
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/rabema_build_gold_standard
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fiona
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/fiona
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bam2roi
extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/bin/bam2roi
/usr/lib/rpm/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match.
BUILDSTDERR: 24471 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/gff_sort.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/roi_plot_9.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/roi_sort.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/bed_sort.sh from /bin/bash to #!/usr/bin/bash
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.lZypzE
Processing files: seqan-1.4.2-37.fc30.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jOybbd
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan
+ cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZdmzL4
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan
+ cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan
+ cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan
+ cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan
+ exit 0
Provides: bundled(gnulib) seqan = 1.4.2-37.fc30 seqan(riscv-64) = 1.4.2-37.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.27)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH)
Processing files: seqan-devel-1.4.2-37.fc30.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ULeTrc
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-devel
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-devel
+ cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-devel
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.97lkxW
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-devel
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-devel
+ cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-devel
+ cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-devel
+ cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-devel
+ exit 0
Provides: seqan-devel = 1.4.2-37.fc30 seqan-devel(riscv-64) = 1.4.2-37.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-doc-1.4.2-37.fc30.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9AKd9V
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-doc
+ cp -pr seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/doc/seqan-doc
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.TkXmxJ
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-doc
+ cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-doc
+ cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-doc
+ cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64/usr/share/licenses/seqan-doc
+ exit 0
Provides: seqan-doc = 1.4.2-37.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debugsource-1.4.2-37.fc30.riscv64
Provides: seqan-debugsource = 1.4.2-37.fc30 seqan-debugsource(riscv-64) = 1.4.2-37.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seqan-debuginfo-1.4.2-37.fc30.riscv64
Provides: debuginfo(build-id) = 00c45da9b40cc3fe4b941f0814e556576955cc59 debuginfo(build-id) = 170a09e21d39bf7d98d9e6a12745bc584753190e debuginfo(build-id) = 1ed7f48e1d7500d802dd79104655b29a16b990d5 debuginfo(build-id) = 20a527c0de3ea452b9f3edeef39873f71d3f193f debuginfo(build-id) = 22ece8bfc28bb7e555d7e18c82b6e462c2963b7d debuginfo(build-id) = 24e61a20efcda35a96a2572026046e2a7a247fcf debuginfo(build-id) = 25d37ca478be77d170ee7369c09f81b7823b0a69 debuginfo(build-id) = 2f789ac643bb170c142ab964c71cf7bac3ae993b debuginfo(build-id) = 31682ece58209d4a0088f86f412f52e7e327411e debuginfo(build-id) = 3601047f5966d2e110dc4750d2ba3497109c1146 debuginfo(build-id) = 3dca2a6b84ee4a65690a16b195d5721ee8ca12fd debuginfo(build-id) = 428a270a409562c7eec540ef075ffe168b1baf02 debuginfo(build-id) = 4a4beb5deb3f6da3de4d47b71ae02dc035e4949e debuginfo(build-id) = 51427633d0c199bba830ba90c26afa82f97cc136 debuginfo(build-id) = 5417b24b85bf21a2aedea99f5b711986c3d40f76 debuginfo(build-id) = 66fd020e656fa3b55c62b5ff4aa6ce29973251ee debuginfo(build-id) = 697559e20faf98e3e2f795ae0dc0f517d15bcabe debuginfo(build-id) = 7e2234b07868ff840bc6e595f5e87c306a0bc224 debuginfo(build-id) = 7fb7b4f8353990c887534940f579286052c8706a debuginfo(build-id) = 88af5de8d0bf9d7d1eb67b4f2f1756a4ade768f2 debuginfo(build-id) = 8d036e8b21558ae2cb7397a2ce3de5e911dcf52d debuginfo(build-id) = 925d8752cac071e3c4b71015cb0eca05cb7b0cb2 debuginfo(build-id) = 96388458c996383a6354c3a61b064a677a2c793b debuginfo(build-id) = 9c36782709de209107015d23afbd5a5114fe3fbc debuginfo(build-id) = 9ecee8352d3ed67f63790ef5c6da9665bd3efca2 debuginfo(build-id) = a11f4d4c07fbad232a99456b4e979e50b7a06cb7 debuginfo(build-id) = bb9e525dbfbaa369a6e18ff0d10ee822d721ac9e debuginfo(build-id) = cc10958bc5ecbdd9c4077908006b1c6c0aba7602 debuginfo(build-id) = cff54b1e1b54cb05f161002a658ff55f4499a849 debuginfo(build-id) = d0d61232c02d371cdd8d1f953b48a4766618e92b debuginfo(build-id) = d49ad848f2a6e665b81a6dbc0a1827c956d5dd40 debuginfo(build-id) = d52af8233cc18ba587e74a9eaa233f6045021714 debuginfo(build-id) = d906b557c506385320deaa9da9fbe0966179c302 debuginfo(build-id) = d956b94d59310e7f150a6bd1a85972b9a13ca6c5 debuginfo(build-id) = d9dd2a361372a9dae929e677cc273be2a9d647fe debuginfo(build-id) = e40df0b99ffbb5cb4011aaec554ddd6558903eab debuginfo(build-id) = e41c02cbc2b446027a6dcbe602d4fe97e57681d9 debuginfo(build-id) = e484700f3afc91db5ebc09b4d33176e66a8ea22c debuginfo(build-id) = e8db7334ee739140ecadce445f07c1b6c4cef56d debuginfo(build-id) = f08a154aaa567c2e6da4789a98766dbf6f57d276 debuginfo(build-id) = f2194128e7369de9c0089899d3fb0b4db93458f5 debuginfo(build-id) = f433e34c676e2171981f1141cfd04297ce180cff debuginfo(build-id) = ff212d78a025138c263824cc1c20c348bd26b595 seqan-debuginfo = 1.4.2-37.fc30 seqan-debuginfo(riscv-64) = 1.4.2-37.fc30
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seqan-debugsource(riscv-64) = 1.4.2-37.fc30
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64
Wrote: /builddir/build/RPMS/seqan-1.4.2-37.fc30.riscv64.rpm
Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-37.fc30.riscv64.rpm
Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-37.fc30.noarch.rpm
Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-37.fc30.riscv64.rpm
Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-37.fc30.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.4MnCTa
+ umask 022
+ cd /builddir/build/BUILD
+ cd seqan-1.4.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-37.fc30.riscv64
+ exit 0
Child return code was: 0