Mock Version: 1.4.21
Mock Version: 1.4.21
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-201993-48101/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fc61dc700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
sh: /usr/bin/python: No such file or directory
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1563926400
Wrote: /builddir/build/SRPMS/apbs-1.5-4.fc33.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'], chrootPath='/var/lib/mock/f33-build-201993-48101/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fc61dc700>timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
sh: /usr/bin/python: No such file or directory
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1563926400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0CBFKH
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf apbs-pdb2pqr-apbs-1.5
+ /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-1.5.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd apbs-pdb2pqr-apbs-1.5
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ cd apbs
Patch #0 (apbs-cmake.patch):
+ echo 'Patch #0 (apbs-cmake.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p0 --fuzz=0
patching file CMakeLists.txt
patching file src/CMakeLists.txt
patching file tools/manip/CMakeLists.txt
patching file tools/mesh/CMakeLists.txt
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.fFuEhI
+ umask 022
+ cd /builddir/build/BUILD
+ cd apbs-pdb2pqr-apbs-1.5
+ cd apbs
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D BUILD_DOC:BOOL=ON .
-- The C compiler identification is GNU 10.0.1
-- The CXX compiler identification is GNU 10.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Setting project paths
-- Setting lookup paths for headers and libraries
-- Computing machine epsilon values
-- Floating point epsilon is 2.220446e-16
-- Double precision epsilon is 2.220446e-16
-- Looking for time
-- Looking for time - found
-- Looking for rand
-- Looking for rand - found
-- Looking for srand
-- Looking for srand - found
-- Inline functions enabled
-- Verbose debugging mode enabled
-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files
-- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc
-- Added apbs_mg
-- Adding apbs_routines
-- With source files routines.c
-- With external header files
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_routines
--
--
-- APBS Libraries: m;stdc++;maloc
-- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines
--
***************************
***************************
-- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection
-- Building documentation enabled
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.17") found components: doxygen dot
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs
-- Building manip
-- libraries: apbs
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_RELEASE
CMAKE_C_FLAGS_RELEASE
CMAKE_Fortran_FLAGS_RELEASE
LIB_SUFFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D BUILD_DOC:BOOL=OFF .
-- Setting project paths
-- Setting lookup paths for headers and libraries
-- Computing machine epsilon values
-- Floating point epsilon is 2.220446e-16
-- Double precision epsilon is 2.220446e-16
-- Inline functions enabled
-- Verbose debugging mode enabled
-- Adding apbs_generic
-- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
-- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_generic
-- Adding apbs_pmgc
-- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
-- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_pmgc
-- Adding apbs_mg
-- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
-- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
-- With internal header files
-- With library dependencies m;stdc++;maloc;apbs_generic;apbs_pmgc
-- Added apbs_mg
-- Adding apbs_routines
-- With source files routines.c
-- With external header files
-- With internal header files
-- With library dependencies m;stdc++;maloc
-- Added apbs_routines
--
--
-- APBS Libraries: m;stdc++;maloc
-- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines
--
***************************
***************************
-- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection
-- Supplemental tools enabled
-- Building mesh
-- libraries: apbs
-- Building manip
-- libraries: apbs
-- Configuring done
-- Generating done
-- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs
+ make -j4
/usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend
make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend
make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend
make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color=
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color=
Scanning dependencies of target apbs_mg
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build
Scanning dependencies of target apbs_routines
Scanning dependencies of target apbs_generic
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build
Scanning dependencies of target apbs_pmgc
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 1%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 2%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c
[ 3%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c
[ 5%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:816:6: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable]
816 | int isBinary = 0;
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:813:18: warning: unused variable 'itmp' [-Wunused-variable]
813 | size_t i, j, k, itmp, u;
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c: In function 'VbuildA':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:61:5: note: in expansion of macro 'MAT2'
61 | MAT2(ac, *nx * *ny * *nz, 14);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
1697 | double xmin, ymin, zmin, hzed, hy, hx;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
1697 | double xmin, ymin, zmin, hzed, hy, hx;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3'
162 | MAT3(gzcf, *nx, *ny, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3'
161 | MAT3(gycf, *nx, *nz, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3'
160 | MAT3(gxcf, *ny, *nz, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3'
159 | MAT3( oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3'
158 | MAT3( oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3'
157 | MAT3( uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3'
156 | MAT3(a3cf, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3'
155 | MAT3(a2cf, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3'
154 | MAT3(a1cf, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:153:5: note: in expansion of macro 'MAT3'
153 | MAT3( oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:152:5: note: in expansion of macro 'MAT3'
152 | MAT3( ccf, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:151:5: note: in expansion of macro 'MAT3'
151 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:150:5: note: in expansion of macro 'MAT3'
150 | MAT3( fcf, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildAd.c:149:5: note: in expansion of macro 'MAT3'
149 | MAT3( fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'loadDielMaps':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
296 | for (ii=0; ii<(nx*ny*nz); ii++)
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
298 | sum = sum*hx*hy*hzed;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
331 | for (ii=0; ii<(nx*ny*nz); ii++)
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
333 | sum = sum*hx*hy*hzed;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
420 | for (ii=0; ii<(nx*ny*nz); ii++)
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
422 | sum = sum*hx*hy*hzed;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
853 | fgets(tok, VMAX_BUFSIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
454 | for (ii=0; ii<(nx*ny*nz); ii++)
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
456 | sum = sum*hx*hy*hzed;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable]
1234 | iparm,
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'energyMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1576:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable]
1576 | MGparm *mgparm;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writematMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1795:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable]
1795 | char mxtype[3];
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:2676:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable]
2676 | APOLparm *apolparm = VNULL;
| ^~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:77,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c: At top level:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:78,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:79,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printApolForce':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:3477:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable]
3477 | scalar,
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:3476:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
3476 | double temp,
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4488:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable]
4488 | sav, /**< @todo document */
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4487:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable]
4487 | double sasa, /**< @todo document */
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4481:12: warning: unused variable 'ts' [-Wunused-variable]
4481 | time_t ts; /**< Temporary timing variable for debugging (PCE) */
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'forceAPOL':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4745:13: warning: unused variable 'apos' [-Wunused-variable]
4745 | *apos;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4729:46: warning: unused variable 'ts_sub' [-Wunused-variable]
4729 | time_t ts, ts_main, ts_sub;
| ^~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:77,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: At top level:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function]
169 | VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function]
171 | VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:78,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function]
251 | VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function]
260 | VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function]
269 | VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function]
278 | VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function]
287 | VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function]
296 | VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function]
305 | VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function]
314 | VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function]
323 | VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function]
332 | VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function]
341 | VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function]
350 | VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function]
359 | VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:79,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:70,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function]
199 | VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function]
208 | VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function]
217 | VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function]
226 | VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function]
235 | VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock);
| ^~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:93,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function]
811 | VPRIVATE void bcolcomp(
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function]
834 | VPRIVATE void bcolcomp2(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function]
863 | VPRIVATE void bcolcomp3(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function]
885 | VPRIVATE void bcolcomp4(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function]
910 | VPRIVATE void pcolcomp(
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function]
933 | VPRIVATE double bspline2(
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function]
942 | VPRIVATE double dbspline2(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function]
951 | VPRIVATE double VFCHI4(
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function]
961 | VPRIVATE double bspline4(
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function]
970 | VPRIVATE double dbspline4(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function]
979 | VPRIVATE double d2bspline4(
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function]
988 | VPRIVATE double d3bspline4(
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function]
998 | VPRIVATE double Vpmg_polarizEnergy(
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function]
1009 | VPRIVATE double Vpmg_qfEnergyPoint(
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function]
1020 | VPRIVATE double Vpmg_qfEnergyVolume(
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function]
1031 | VPRIVATE void Vpmg_splineSelect(
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function]
1047 | VPRIVATE void focusFillBound(
| ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function]
1058 | VPRIVATE void bcfl1(
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function]
1080 | VPRIVATE void bcfl2(
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function]
1109 | VPRIVATE void multipolebc(
| ^~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function]
1126 | VPRIVATE double bcfl1sp(
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function]
1139 | VPRIVATE void bcCalc(
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function]
1147 | VPRIVATE void fillcoCoef(
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function]
1155 | VPRIVATE void fillcoCoefMap(
| ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function]
1164 | VPRIVATE void fillcoCoefMol(
| ^~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function]
1173 | VPRIVATE void fillcoCoefMolIon(
| ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function]
1182 | VPRIVATE void fillcoCoefMolDiel(
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function]
1191 | VPRIVATE void fillcoCoefMolDielNoSmooth(
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function]
1208 | VPRIVATE void fillcoCoefMolDielSmooth(
| ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function]
1217 | VPRIVATE void fillcoCoefSpline(
| ^~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function]
1226 | VPRIVATE void fillcoCoefSpline3(
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function]
1235 | VPRIVATE void fillcoCoefSpline4(
| ^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function]
1244 | VPRIVATE Vrc_Codes fillcoCharge(
| ^~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function]
1253 | VPRIVATE Vrc_Codes fillcoChargeMap(
| ^~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function]
1261 | VPRIVATE void fillcoChargeSpline1(
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function]
1269 | VPRIVATE void fillcoChargeSpline2(
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function]
1277 | VPRIVATE void fillcoPermanentMultipole(
| ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
1285 | VPRIVATE void fillcoInducedDipole(
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
1294 | VPRIVATE void fillcoNLInducedDipole(
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function]
1304 | VPRIVATE void extEnergy(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function]
1317 | VPRIVATE void qfForceSpline1(
| ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function]
1327 | VPRIVATE void qfForceSpline2(
| ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function]
1337 | VPRIVATE void qfForceSpline4(
| ^~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function]
1351 | VPRIVATE void zlapSolve(
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function]
1364 | VPRIVATE void markSphere(
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function]
1384 | VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag);
| ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function]
1385 | VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag);
| ^~~~~~~~~~~~~~~~~~~
[ 6%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:60:5: note: in expansion of macro 'MAT2'
60 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT3'
128 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:127:5: note: in expansion of macro 'MAT3'
127 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:126:5: note: in expansion of macro 'MAT3'
126 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:125:5: note: in expansion of macro 'MAT3'
125 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:123:5: note: in expansion of macro 'MAT2'
123 | MAT2(acB, *lda, *ny-1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3'
208 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3'
207 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3'
206 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3'
205 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3'
203 | MAT3( uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3'
202 | MAT3( uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:201:5: note: in expansion of macro 'MAT3'
201 | MAT3( uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3'
200 | MAT3( uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3'
198 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3'
197 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT3'
195 | MAT3( uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:194:5: note: in expansion of macro 'MAT3'
194 | MAT3( oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:193:5: note: in expansion of macro 'MAT3'
193 | MAT3( oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:192:5: note: in expansion of macro 'MAT3'
192 | MAT3( oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildBd.c:190:5: note: in expansion of macro 'MAT2'
190 | MAT2(acB, *lda, *ny-1);
| ^~~~
[ 7%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:59:5: note: in expansion of macro 'MAT2'
59 | MAT2( ac, *nxc * *nyc * *nzc, 27);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:58:5: note: in expansion of macro 'MAT2'
58 | MAT2(acFF, *nxf * *nyf * *nzf, 27);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:57:5: note: in expansion of macro 'MAT2'
57 | MAT2(pcFF, *nxc * *nyc * *nzc, 27);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3'
211 | MAT3(dPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3'
210 | MAT3(dPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3'
209 | MAT3(dPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3'
208 | MAT3(dPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:207:5: note: in expansion of macro 'MAT3'
207 | MAT3( dPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3'
206 | MAT3( dPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3'
205 | MAT3( dPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3'
204 | MAT3( dPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3'
203 | MAT3( dPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3'
201 | MAT3(uPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3'
200 | MAT3(uPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3'
199 | MAT3(uPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3'
198 | MAT3(uPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:197:5: note: in expansion of macro 'MAT3'
197 | MAT3( uPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3'
196 | MAT3( uPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3'
195 | MAT3( uPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3'
194 | MAT3( uPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3'
193 | MAT3( uPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3'
191 | MAT3(oPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3'
190 | MAT3(oPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3'
189 | MAT3(oPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3'
188 | MAT3(oPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:187:5: note: in expansion of macro 'MAT3'
187 | MAT3( oPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3'
186 | MAT3( oPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3'
185 | MAT3( oPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3'
184 | MAT3( oPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3'
183 | MAT3( oPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3'
181 | MAT3(XuSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3'
180 | MAT3(XuSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3'
179 | MAT3(XuNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:178:5: note: in expansion of macro 'MAT3'
178 | MAT3(XuNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3'
177 | MAT3( XuS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3'
176 | MAT3( XuN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:175:5: note: in expansion of macro 'MAT3'
175 | MAT3( XuW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3'
174 | MAT3( XuE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3'
172 | MAT3(XoNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3'
171 | MAT3(XoNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:169:5: note: in expansion of macro 'MAT3'
169 | MAT3( XuC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:167:5: note: in expansion of macro 'MAT3'
167 | MAT3( XoN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:166:5: note: in expansion of macro 'MAT3'
166 | MAT3( XoE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:165:5: note: in expansion of macro 'MAT3'
165 | MAT3( XoC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:163:5: note: in expansion of macro 'MAT3'
163 | MAT3( oC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
159 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
159 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:159:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
159 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:158:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
158 | int iim1, iip1, jjm1, jjp1, kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writematMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:1832:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
1832 | sprintf(outpath, "%s.%s", writematstem, "mat");
| ^~ ~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3'
527 | MAT3(dPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3'
526 | MAT3(dPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3'
525 | MAT3(dPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3'
524 | MAT3(dPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:523:5: note: in expansion of macro 'MAT3'
523 | MAT3( dPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3'
522 | MAT3( dPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3'
521 | MAT3( dPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3'
520 | MAT3( dPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3'
519 | MAT3( dPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3'
517 | MAT3(uPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3'
516 | MAT3(uPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3'
515 | MAT3(uPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3'
514 | MAT3(uPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:513:5: note: in expansion of macro 'MAT3'
513 | MAT3( uPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3'
512 | MAT3( uPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3'
511 | MAT3( uPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3'
510 | MAT3( uPN, *nx, *ny, *nz);
| ^~~~
[ 8%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3'
509 | MAT3( uPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3'
507 | MAT3(oPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3'
506 | MAT3(oPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3'
505 | MAT3(oPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3'
504 | MAT3(oPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:503:5: note: in expansion of macro 'MAT3'
503 | MAT3( oPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3'
502 | MAT3( oPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3'
501 | MAT3( oPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3'
500 | MAT3( oPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3'
499 | MAT3( oPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3'
497 | MAT3(XuSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3'
496 | MAT3(XuSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3'
495 | MAT3(XuNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3'
494 | MAT3(XuNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:493:5: note: in expansion of macro 'MAT3'
493 | MAT3( XuS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3'
492 | MAT3( XuN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3'
491 | MAT3( XuW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3'
490 | MAT3( XuE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3'
489 | MAT3( XuC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:487:5: note: in expansion of macro 'MAT3'
487 | MAT3(XoNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3'
486 | MAT3(XoNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:485:5: note: in expansion of macro 'MAT3'
485 | MAT3( XoN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3'
484 | MAT3( XoE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3'
483 | MAT3( XoC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:481:5: note: in expansion of macro 'MAT3'
481 | MAT3( uC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:479:5: note: in expansion of macro 'MAT3'
479 | MAT3( oN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:478:5: note: in expansion of macro 'MAT3'
478 | MAT3( oE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:477:5: note: in expansion of macro 'MAT3'
477 | MAT3( oC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
468 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
468 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:468:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
468 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:467:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
467 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:464:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
464 | int km1, kp1, km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:464:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
464 | int km1, kp1, km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:463:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
463 | int jm1, jp1, jm2, jp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:462:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
462 | int im1, ip1, im2, ip2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataFlat':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2097:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2097 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
In file included from /usr/include/string.h:495,
from /usr/include/maloc/maloc_base.h:82,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:57:
In function 'strncpy',
inlined from 'NOsh_parseAPOLAR' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1341:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:582:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseELEC' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1222:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:577:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_MESH' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:953:9,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1007:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_CHARGE' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:918:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1005:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable]
198 | double tgrad[3];
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable]
197 | int i, j, rc;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable]
197 | int i, j, rc;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable]
197 | int i, j, rc;
| ^
In function 'strncpy',
inlined from 'NOsh_parseREAD_POTENTIAL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:872:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1003:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_KAPPA' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:827:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:1001:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:772:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:776:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_DIEL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:780:5,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:999:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:723:13,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:997:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_PARM' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:701:13,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:997:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:659:9,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:640:9,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'NOsh_parseREAD_MOL' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:621:9,
inlined from 'NOsh_parseREAD' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:995:13,
inlined from 'NOsh_parseInput.part.0' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/nosh.c:567:18:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataXML':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2355:33: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2355 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3'
1375 | MAT3(dPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3'
1374 | MAT3(dPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3'
1373 | MAT3(dPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3'
1372 | MAT3(dPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1371:5: note: in expansion of macro 'MAT3'
1371 | MAT3( dPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3'
1370 | MAT3( dPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3'
1369 | MAT3( dPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3'
1368 | MAT3( dPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3'
1367 | MAT3( dPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3'
1365 | MAT3(uPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3'
1364 | MAT3(uPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3'
1363 | MAT3(uPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3'
1362 | MAT3(uPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1361:5: note: in expansion of macro 'MAT3'
1361 | MAT3( uPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3'
1360 | MAT3( uPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3'
1359 | MAT3( uPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3'
1358 | MAT3( uPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3'
1357 | MAT3( uPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3'
1355 | MAT3(oPSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3'
1354 | MAT3(oPSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3'
1353 | MAT3(oPNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3'
1352 | MAT3(oPNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1351:5: note: in expansion of macro 'MAT3'
1351 | MAT3( oPW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3'
1350 | MAT3( oPE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3'
1349 | MAT3( oPS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3'
1348 | MAT3( oPN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3'
1347 | MAT3( oPC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3'
1345 | MAT3(XuSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3'
1344 | MAT3(XuSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3'
1343 | MAT3(XuNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3'
1342 | MAT3(XuNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1341:5: note: in expansion of macro 'MAT3'
1341 | MAT3( XuS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3'
1340 | MAT3( XuN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3'
1339 | MAT3( XuW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3'
1338 | MAT3( XuE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3'
1337 | MAT3( XuC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1335:5: note: in expansion of macro 'MAT3'
1335 | MAT3(XoNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3'
1334 | MAT3(XoNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3'
1333 | MAT3( XoN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3'
1332 | MAT3( XoE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3'
1331 | MAT3( XoC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3'
1329 | MAT3( uSW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3'
1328 | MAT3( uSE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3'
1327 | MAT3( uNW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3'
1326 | MAT3( uNE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1325:5: note: in expansion of macro 'MAT3'
1325 | MAT3( uS, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3'
1324 | MAT3( uN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3'
1323 | MAT3( uW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3'
1322 | MAT3( uE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3'
1321 | MAT3( uC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1319:5: note: in expansion of macro 'MAT3'
1319 | MAT3( oNW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1318:5: note: in expansion of macro 'MAT3'
1318 | MAT3( oNE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1317:5: note: in expansion of macro 'MAT3'
1317 | MAT3( oN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1316:5: note: in expansion of macro 'MAT3'
1316 | MAT3( oE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1315:5: note: in expansion of macro 'MAT3'
1315 | MAT3( oC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable]
1272 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable]
1272 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1272:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable]
1272 | int nxm1, nym1, nzm1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1271:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
1271 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1268:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
1268 | int km1, kp1, km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildGd.c:1268:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
1268 | int km1, kp1, km2, kp2;
| ^~~
[ 10%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'writedataMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2668:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2668 | sprintf(outpath, "%s.%s", writestem, "dxbin");
| ^~ ~~~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2712:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2712 | sprintf(outpath, "%s.%s", writestem, "txt");
| ^~ ~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2703:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2703 | sprintf(outpath, "%s.%s", writestem, "dx.gz");
| ^~ ~~~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2686:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2686 | sprintf(outpath, "%s.%s", writestem, "mcsf");
| ^~ ~~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2679:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2679 | sprintf(outpath, "%s.%s", writestem, "ucd");
| ^~ ~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2693:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2693 | sprintf(outpath, "%s.%s", writestem, "grd");
| ^~ ~~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2658:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
2658 | sprintf(outpath, "%s.%s", writestem, "dx");
| ^~ ~~~~
In file included from /usr/include/stdio.h:871,
from /usr/include/maloc/maloc_base.h:80,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/apbs.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.h:64,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:54:
/usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c: In function 'Vopot_curvature':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable]
219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable]
219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable]
219 | double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'returnEnergy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2770:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2770 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printEnergy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2831:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2831 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printElecEnergy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2896:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2896 | ltenergy += (scalar * Vunit_kb * (1e-3) * Vunit_Na *
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
269 | u = u + val;
| ~~^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'printApolEnergy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:2962:18: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
2962 | gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) +
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2963 | (apolparm->press*apolparm->sav) +
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2964 | (apolparm->wcaEnergy)));
| ~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/mgparm.c
[ 12%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable]
157 | double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable]
1503 | zks2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable]
1712 | double *pvec;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable]
1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable]
1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable]
1709 | double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable]
1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable]
1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable]
1794 | double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'focusFillBound':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable]
1953 | charge,
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable]
1952 | *apos,
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable]
1951 | size,
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable]
1950 | xkappa,
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable]
2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable]
2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable]
2668 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcCalcOrig':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable]
2832 | double *dipole, *quadrupole, debye, eps_p;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable]
2832 | double *dipole, *quadrupole, debye, eps_p;
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable]
2832 | double *dipole, *quadrupole, debye, eps_p;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcflnew':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3454: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
3454 | #pragma omp parallel for default(shared) private(igrid,iatom,dist)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3464: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
3464 | #pragma omp parallel for default(shared) private(igrid,iatom,dist)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable]
3415 | double dist, pre1, eps_w, eps_p, T, xkappa;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable]
3410 | int x0, x1, y0, y1, z0, z1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable]
3409 | int i,j,k, iatom, igrid;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable]
3409 | int i,j,k, iatom, igrid;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable]
3409 | int i,j,k, iatom, igrid;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'multipolebc':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable]
3492 | double kr,kr2,kr3;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_sdh':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable]
3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable]
3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable]
3608 | double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable]
3604 | double *dipole, *quadrupole;
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable]
3604 | double *dipole, *quadrupole;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_mdh':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable]
3875 | double size, charge, xkappa, eps_w, eps_p, T, pre1, dist;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable]
3874 | double *dipole, *quadrupole;
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable]
3874 | double *dipole, *quadrupole;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_mem':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable]
4008 | double A, B, C, D, edge_L, l;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable]
4007 | double dist, val, z_low, z_high, z_shift;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable]
4007 | double dist, val, z_low, z_high, z_shift;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcfl_map':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
4177 | double position[3], pot, hx, hy, hzed;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
4177 | double position[3], pot, hx, hy, hzed;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable]
4177 | double position[3], pot, hx, hy, hzed;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable]
4176 | Vpbe *pbe;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable]
4492 | double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable]
4638 | Vsurf_Meth surfMeth;
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable]
4630 | Vacc *acc;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4789: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
4789 | #pragma omp parallel for default(shared) private(iatom,atom,apos,arad)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4849: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
4849 | #pragma omp parallel for default(shared) private(iatom,atom,area,asurf,ipt,position)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable]
4746 | double srad, epsw, epsp, deps, area;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
5031 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCharge':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable]
5289 | Vrc_Codes rc;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable]
5346 | double position[3], charge, zmagic, hx, hy, hzed;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable]
5346 | double position[3], charge, zmagic, hx, hy, hzed;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable]
5346 | double position[3], charge, zmagic, hx, hy, hzed;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_force':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable]
5829 | double npF[3]; /* Non-polar boundary force */
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
5854 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable]
5848 | Valist *alist;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable]
6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable]
6019 | double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
6018 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'qfForceSpline2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
6453 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'qfForceSpline4':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable]
6576 | int i, j, k, ii, jj, kk;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable]
6576 | int i, j, k, ii, jj, kk;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable]
6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable]
6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable]
6568 | double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'markFrac':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable]
6692 | double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'zlapSolve':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable]
6912 | double norm, coef, proj, eigx, eigy, eigz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable]
7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable]
7044 | int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable]
7263 | double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable]
7262 | double mir,mjr,mkr,mr2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable]
7262 | double mir,mjr,mkr,mr2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable]
7262 | double mir,mjr,mkr,mr2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable]
7262 | double mir,mjr,mkr,mr2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable]
7258 | int i, ii, jj, kk, nx, ny, nz, iatom;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable]
7253 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable]
7252 | double charge, *dipole,*quad;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable]
7252 | double charge, *dipole,*quad;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
9948 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable]
9946 | double irad, dx, dy, dz, epsw, epsp, w2i;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable]
10278 | int i, ii, jj, kk, nx, ny, nz, iatom;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable]
10273 | double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable]
10272 | double charge, *dipole,*quad;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable]
10272 | double charge, *dipole,*quad;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable]
10441 | double e, e2, e3, e4, e5;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable]
10439 | double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable]
10437 | double irad, dx, dy, dz, epsw, epsp, w2i;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable]
10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable]
10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable]
10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable]
10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable]
10746 | int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable]
10743 | int nrow, ncol, nnzero, i;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable]
10743 | int nrow, ncol, nnzero, i;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable]
10743 | int nrow, ncol, nnzero, i;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable]
10743 | int nrow, ncol, nnzero, i;
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:93,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:73:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2'
10804 | MAT2(iz, 50, nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp3':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2'
10836 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: In function 'bcolcomp4':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3'
10874 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3'
10873 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3'
10872 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3'
10871 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3'
10870 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
10866 | int inonz, iirow, nn, nrow, ncol, nonz, irow, n;
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:73:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c: At top level:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function]
1285 | VPRIVATE void fillcoInducedDipole(
| ^~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function]
1294 | VPRIVATE void fillcoNLInducedDipole(
| ^~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c: In function 'initAPOL':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4539:30: warning: 'center[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
4539 | disp[0] = (x - center[0]);
| ~~~~~~^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4540:30: warning: 'center[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
4540 | disp[1] = (y - center[1]);
| ~~~~~~^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/routines.c:4541:30: warning: 'center[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
4541 | disp[2] = (z - center[2]);
| ~~~~~~^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function]
7229 | VPUBLIC double d3bspline4(double x) {
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function]
6684 | VPRIVATE void markFrac(
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function]
3868 | VPRIVATE void bcfl_mdh(Vpmg *thee){
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function]
2828 | VPRIVATE void bcCalcOrig(Vpmg *thee) {
| ^~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function]
2547 | VPRIVATE double bcfl1sp(double size, double *apos, double charge,
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function]
1148 | VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee,
| ^~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 12%] Built target apbs_routines
[ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/femparm.c
[ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:302:17: warning: unused variable 'name' [-Wunused-variable]
302 | const char* name = "randorient";
| ^~~~
In file included from /usr/include/string.h:495,
from /usr/include/maloc/maloc_base.h:82,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.h:68,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:57:
In function 'strncpy',
inlined from 'PBAMparm_parseRunType' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:279:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseRunName' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:294:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseUnits' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:341:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parse3Dmap' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:376:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseDX' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:426:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseTermcombine' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:440:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:392:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseGrid2D' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:400:7:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseXYZ' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:640:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseDiff' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:488:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:548:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c
In function 'strncpy',
inlined from 'PBAMparm_parseTerm' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbamparm.c:557:11:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
79 | int i;
| ^
In file included from /usr/include/string.h:495,
from /usr/include/maloc/maloc_base.h:82,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.h:68,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:57:
In function 'strncpy',
inlined from 'PBSAMparm_parseSurf' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:174:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBSAMparm_parseImat' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:195:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c
In function 'strncpy',
inlined from 'PBSAMparm_parseExp' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbsamparm.c:210:8:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1000 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
79 | int i;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_check':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable]
127 | int i, tdime[3], ti, tnlev[3], nlev;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable]
127 | int i, tdime[3], ti, tnlev[3], nlev;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable]
127 | int i, tdime[3], ti, tnlev[3], nlev;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable]
127 | int i, tdime[3], ti, tnlev[3], nlev;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable]
127 | int i, tdime[3], ti, tnlev[3], nlev;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c: In function 'BEMparm_copy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable]
176 | int i;
| ^
[ 20%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c
In file included from /usr/include/string.h:495,
from /usr/include/maloc/maloc_base.h:82,
from /usr/include/maloc/maloc.h:38,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.h:67,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:57:
In function 'strncpy',
inlined from 'PBEparm_parseWRITE' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:1157:9:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'strncpy',
inlined from 'PBEparm_parseWRITEMAT' at /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/pbeparm.c:1198:5:
/usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 1024 bytes from a string of length 8191 [-Wstringop-truncation]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable]
79 | int i;
| ^
[ 21%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/apolparm.c
[ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable]
841 | Vmem *mem;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable]
1104 | double e, e2, e3, e4, e5;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable]
1338 | time_t ts;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
1335 | VaccSurf *ref;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
1395 | VaccSurf *ref;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable]
1392 | double *temp_Pos, tRad;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable]
1391 | int iatom;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable]
1454 | VaccSurf *ref;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable]
1451 | double *temp_Pos, tRad;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable]
1450 | int iatom;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable]
1584 | int npts[3];
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable]
1807 | time_t ts;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable]
1764 | npts[3],
| ^~~~
[ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c: In function 'Valist_readPQR':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable]
618 | char chs[VMAX_BUFSIZE];
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c: In function 'Valist_readXML':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized]
834 | Vatom_setRadius(nextAtom, radius);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized]
833 | Vatom_setCharge(nextAtom, charge);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized]
831 | pos[0] = x; pos[1] = y; pos[2] = z;
| ~~~~~~~^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
831 | pos[0] = x; pos[1] = y; pos[2] = z;
| ~~~~~~~^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized]
831 | pos[0] = x; pos[1] = y; pos[2] = z;
| ~~~~~~~^~~
[ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vatom.c
[ 26%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vpbe.c
[ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vcap.c
[ 28%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vclist.c
[ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vstring.c
[ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c
[ 32%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable]
229 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable]
229 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable]
229 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable]
229 | double *q, qtemp, fx, fy, fz;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable]
229 | double *q, qtemp, fx, fy, fz;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable]
264 | int iatom, ipos;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable]
263 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable]
263 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable]
263 | double *q, qtemp, fx, fy, fz;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable]
263 | double *q, qtemp, fx, fy, fz;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable]
263 | double *q, qtemp, fx, fy, fz;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable]
262 | double *apos, charge, dist, dx, dy, dz, scale;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable]
261 | Vatom *atom;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable]
316 | double *q, qtemp;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable]
316 | double *q, qtemp;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable]
368 | int iatom, ipos;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable]
367 | double *q, qtemp;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable]
367 | double *q, qtemp;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable]
366 | double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable]
365 | Vatom *atom;
| ^~~~
At top level:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function]
525 | VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar,
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function]
505 | VPRIVATE int treecleanup(Vgreen *thee) {
| ^~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function]
425 | VPRIVATE int treesetup(Vgreen *thee) {
| ^~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized]
389 | tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData));
| ~^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized]
309 | int i, ires, natoms, nalloc, ralloc;
| ^~~~~~
[ 33%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 33%] Built target apbs_generic
[ 35%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:62:5: note: in expansion of macro 'MAT2'
62 | MAT2(ac, *nxf * *nyf * *nzf, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:61:5: note: in expansion of macro 'MAT2'
61 | MAT2(pc, *nxc * *nyc * *nzc, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:96:5: note: in expansion of macro 'MAT2'
96 | MAT2(pc, *nxc * *nyc * *nzc, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3'
158 | MAT3(dPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3'
157 | MAT3(dPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3'
156 | MAT3(dPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3'
155 | MAT3(dPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:153:5: note: in expansion of macro 'MAT3'
153 | MAT3( dPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3'
152 | MAT3( dPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3'
151 | MAT3( dPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3'
150 | MAT3( dPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3'
149 | MAT3( dPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3'
147 | MAT3(uPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3'
146 | MAT3(uPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3'
145 | MAT3(uPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3'
144 | MAT3(uPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:142:5: note: in expansion of macro 'MAT3'
142 | MAT3( uPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3'
141 | MAT3( uPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3'
140 | MAT3( uPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3'
139 | MAT3( uPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3'
138 | MAT3( uPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3'
136 | MAT3(oPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3'
135 | MAT3(oPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3'
134 | MAT3(oPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3'
133 | MAT3(oPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:131:5: note: in expansion of macro 'MAT3'
131 | MAT3( oPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:130:5: note: in expansion of macro 'MAT3'
130 | MAT3( oPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:129:5: note: in expansion of macro 'MAT3'
129 | MAT3( oPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:128:5: note: in expansion of macro 'MAT3'
128 | MAT3( oPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:127:5: note: in expansion of macro 'MAT3'
127 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:207:5: note: in expansion of macro 'MAT2'
207 | MAT2(pc, *nxc * *nyc * *nzc, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:206:5: note: in expansion of macro 'MAT2'
206 | MAT2(ac, *nxf * *nyf * *nzf, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3'
282 | MAT3(dPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3'
281 | MAT3(dPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3'
280 | MAT3(dPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3'
279 | MAT3(dPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3'
278 | MAT3( dPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3'
277 | MAT3( dPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3'
276 | MAT3( dPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3'
275 | MAT3( dPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3'
274 | MAT3( dPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3'
273 | MAT3(uPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3'
272 | MAT3(uPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3'
271 | MAT3(uPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3'
270 | MAT3(uPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3'
269 | MAT3( uPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3'
268 | MAT3( uPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3'
267 | MAT3( uPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3'
266 | MAT3( uPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3'
265 | MAT3( uPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3'
264 | MAT3(oPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3'
263 | MAT3(oPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3'
262 | MAT3(oPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3'
261 | MAT3(oPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3'
260 | MAT3( oPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3'
259 | MAT3( oPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3'
258 | MAT3( oPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3'
257 | MAT3( oPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:256:5: note: in expansion of macro 'MAT3'
256 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:255:5: note: in expansion of macro 'MAT3'
255 | MAT3( uC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:254:5: note: in expansion of macro 'MAT3'
254 | MAT3( oN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:253:5: note: in expansion of macro 'MAT3'
253 | MAT3( oE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:252:5: note: in expansion of macro 'MAT3'
252 | MAT3( oC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable]
250 | double won, half, quarter, eighth;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable]
250 | double won, half, quarter, eighth;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:250:17: warning: variable 'half' set but not used [-Wunused-but-set-variable]
250 | double won, half, quarter, eighth;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:248:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable]
248 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:248:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
248 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:247:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable]
247 | int jjm1, jjp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:247:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable]
247 | int jjm1, jjp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:246:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable]
246 | int iim1, iip1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:246:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable]
246 | int iim1, iip1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:245:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
245 | int km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:245:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
245 | int km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:243:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
243 | int jm2, jp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:243:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable]
243 | int jm2, jp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:241:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
241 | int im2, ip2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:241:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable]
241 | int im2, ip2;
| ^~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:723:5: note: in expansion of macro 'MAT2'
723 | MAT2(pc, *nxc * *nyc * *nzc, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:722:5: note: in expansion of macro 'MAT2'
722 | MAT2(ac, *nxf * *nyf * *nzf, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3'
813 | MAT3(dPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3'
812 | MAT3(dPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3'
811 | MAT3(dPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3'
810 | MAT3(dPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3'
809 | MAT3( dPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3'
808 | MAT3( dPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3'
807 | MAT3( dPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3'
806 | MAT3( dPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3'
805 | MAT3( dPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3'
804 | MAT3(uPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3'
803 | MAT3(uPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3'
802 | MAT3(uPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3'
801 | MAT3(uPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3'
800 | MAT3( uPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3'
799 | MAT3( uPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3'
798 | MAT3( uPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3'
797 | MAT3( uPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3'
796 | MAT3( uPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3'
795 | MAT3(oPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3'
794 | MAT3(oPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3'
793 | MAT3(oPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3'
792 | MAT3(oPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3'
791 | MAT3( oPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3'
790 | MAT3( oPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3'
789 | MAT3( oPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3'
788 | MAT3( oPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3'
787 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3'
786 | MAT3( uSW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3'
785 | MAT3( uSE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3'
784 | MAT3( uNW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3'
783 | MAT3( uNE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3'
782 | MAT3( uS, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3'
781 | MAT3( uN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3'
780 | MAT3( uW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3'
779 | MAT3( uE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3'
778 | MAT3( oNW, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:777:7: note: in expansion of macro 'MAT3'
777 | MAT3( oNE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:776:7: note: in expansion of macro 'MAT3'
776 | MAT3( uC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:775:7: note: in expansion of macro 'MAT3'
775 | MAT3( oN, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:774:7: note: in expansion of macro 'MAT3'
774 | MAT3( oE, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:773:7: note: in expansion of macro 'MAT3'
773 | MAT3( oC, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable]
771 | double won, half, quarter, eighth;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable]
771 | double won, half, quarter, eighth;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:771:19: warning: variable 'half' set but not used [-Wunused-but-set-variable]
771 | double won, half, quarter, eighth;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:769:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable]
769 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:769:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable]
769 | int kkm1, kkp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:768:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable]
768 | int jjm1, jjp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:768:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable]
768 | int jjm1, jjp1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:767:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable]
767 | int iim1, iip1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:767:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable]
767 | int iim1, iip1;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:766:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable]
766 | int km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:766:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable]
766 | int km2, kp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:764:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable]
764 | int jm2, jp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:764:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable]
764 | int jm2, jp2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:762:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable]
762 | int im2, ip2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/buildPd.c:762:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable]
762 | int im2, ip2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c: In function 'Vcghs':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/cgd.c:94:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized]
94 | beta = rhok2 / rhok1;
| ~~~~~~^~~~~~~
[ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:62:5: note: in expansion of macro 'MAT2'
62 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:116: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
116 | #pragma omp parallel for private(i, j, k, ioff)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:136: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
136 | #pragma omp parallel for private(i, j, k, ioff)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3'
111 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3'
110 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3'
109 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3'
108 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3'
106 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3'
106 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3'
106 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3'
105 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3'
105 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:105:5: note: in expansion of macro 'MAT3'
105 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3'
104 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3'
104 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:104:5: note: in expansion of macro 'MAT3'
104 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:103:5: note: in expansion of macro 'MAT3'
103 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:102:5: note: in expansion of macro 'MAT3'
102 | MAT3(fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:101:5: note: in expansion of macro 'MAT3'
101 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3'
203 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3'
202 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3'
201 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:200:5: note: in expansion of macro 'MAT3'
200 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3'
199 | MAT3( uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3'
198 | MAT3( uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:197:5: note: in expansion of macro 'MAT3'
197 | MAT3( uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3'
196 | MAT3( uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3'
194 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3'
193 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3'
191 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3'
190 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3'
189 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3'
188 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3'
186 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3'
186 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3'
186 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3'
185 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3'
185 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:185:5: note: in expansion of macro 'MAT3'
185 | MAT3(w2, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3'
184 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3'
184 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:184:5: note: in expansion of macro 'MAT3'
184 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:183:5: note: in expansion of macro 'MAT3'
183 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:182:5: note: in expansion of macro 'MAT3'
182 | MAT3(fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:181:5: note: in expansion of macro 'MAT3'
181 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:177:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable]
177 | int istep;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable]
175 | int i2, j2, k2;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable]
175 | int i2, j2, k2;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:175:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable]
175 | int i2, j2, k2;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable]
174 | int i1, j1, k1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable]
174 | int i1, j1, k1;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/gsd.c:174:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable]
174 | int i1, j1, k1;
| ^~
[ 37%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c
[ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable]
204 | int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot;
| ^~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:82:5: note: in expansion of macro 'MAT2'
82 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:110: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
110 | #pragma omp parallel for private(i, j, k)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3'
107 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3'
106 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:105:5: note: in expansion of macro 'MAT3'
105 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:104:5: note: in expansion of macro 'MAT3'
104 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:103:5: note: in expansion of macro 'MAT3'
103 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:102:5: note: in expansion of macro 'MAT3'
102 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:101:5: note: in expansion of macro 'MAT3'
101 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:134:5: note: in expansion of macro 'MAT2'
134 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:182: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
182 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3'
179 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3'
178 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3'
177 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3'
176 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:175:5: note: in expansion of macro 'MAT3'
175 | MAT3(uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3'
174 | MAT3(uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3'
173 | MAT3(uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3'
172 | MAT3(uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3'
171 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:169:5: note: in expansion of macro 'MAT3'
169 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3'
168 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3'
167 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3'
166 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:165:5: note: in expansion of macro 'MAT3'
165 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:163:5: note: in expansion of macro 'MAT3'
163 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:162:5: note: in expansion of macro 'MAT3'
162 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:161:5: note: in expansion of macro 'MAT3'
161 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:258:5: note: in expansion of macro 'MAT2'
258 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:296: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
296 | #pragma omp parallel for private(i, j, k)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3'
287 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3'
286 | MAT3( y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3'
285 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:284:5: note: in expansion of macro 'MAT3'
284 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3'
283 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3'
283 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:283:5: note: in expansion of macro 'MAT3'
283 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:282:5: note: in expansion of macro 'MAT3'
282 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:281:5: note: in expansion of macro 'MAT3'
281 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:280:5: note: in expansion of macro 'MAT3'
280 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:317:5: note: in expansion of macro 'MAT2'
317 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:374: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
374 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3'
365 | MAT3( w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3'
364 | MAT3( y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3'
363 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3'
362 | MAT3( oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3'
361 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3'
361 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3'
361 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3'
360 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3'
359 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3'
358 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3'
357 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3'
356 | MAT3( uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3'
355 | MAT3( uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3'
354 | MAT3( uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3'
353 | MAT3( uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:352:5: note: in expansion of macro 'MAT3'
352 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:351:5: note: in expansion of macro 'MAT3'
351 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:350:5: note: in expansion of macro 'MAT3'
350 | MAT3( uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:349:5: note: in expansion of macro 'MAT3'
349 | MAT3( oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:348:5: note: in expansion of macro 'MAT3'
348 | MAT3( oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:446:5: note: in expansion of macro 'MAT2'
446 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:474: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
474 | #pragma omp parallel for private(i, j, k)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3'
471 | MAT3(r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3'
470 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3'
469 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:468:5: note: in expansion of macro 'MAT3'
468 | MAT3(fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:467:5: note: in expansion of macro 'MAT3'
467 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:466:5: note: in expansion of macro 'MAT3'
466 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:465:5: note: in expansion of macro 'MAT3'
465 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:464:5: note: in expansion of macro 'MAT3'
464 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:498:5: note: in expansion of macro 'MAT2'
498 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:547: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
547 | #pragma omp parallel for private(i, j, k, tmpO, tmpU, tmpD)
|
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3'
545 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3'
544 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3'
543 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3'
542 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:541:5: note: in expansion of macro 'MAT3'
541 | MAT3(uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3'
540 | MAT3(uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3'
539 | MAT3(uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3'
538 | MAT3(uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3'
537 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:535:5: note: in expansion of macro 'MAT3'
535 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3'
534 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3'
533 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3'
532 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3'
531 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:529:5: note: in expansion of macro 'MAT3'
529 | MAT3(r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:528:5: note: in expansion of macro 'MAT3'
528 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:527:5: note: in expansion of macro 'MAT3'
527 | MAT3(fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:526:5: note: in expansion of macro 'MAT3'
526 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:618:5: note: in expansion of macro 'MAT2'
618 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3'
645 | MAT3(w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3'
644 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3'
643 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3'
642 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:641:5: note: in expansion of macro 'MAT3'
641 | MAT3(fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3'
640 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3'
640 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:640:5: note: in expansion of macro 'MAT3'
640 | MAT3(cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:639:5: note: in expansion of macro 'MAT3'
639 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:638:5: note: in expansion of macro 'MAT3'
638 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:637:5: note: in expansion of macro 'MAT3'
637 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:676:5: note: in expansion of macro 'MAT2'
676 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3'
722 | MAT3( w1, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3'
721 | MAT3( r, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3'
720 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3'
719 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3'
718 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3'
717 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3'
716 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3'
715 | MAT3( uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3'
714 | MAT3( uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3'
713 | MAT3( uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3'
712 | MAT3( uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3'
711 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3'
710 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3'
709 | MAT3( uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:708:5: note: in expansion of macro 'MAT3'
708 | MAT3( oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:707:5: note: in expansion of macro 'MAT3'
707 | MAT3( oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:706:5: note: in expansion of macro 'MAT3'
706 | MAT3( fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3'
705 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3'
705 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:705:5: note: in expansion of macro 'MAT3'
705 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:704:5: note: in expansion of macro 'MAT3'
704 | MAT3( oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vrestrc':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:781:5: note: in expansion of macro 'MAT2'
781 | MAT2(pc, *nxc * *nyc * *nzc, 1 );
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:855: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
855 | #pragma omp parallel for private(k, kk, j, jj, i, ii, tmpO, tmpU, tmpD)
|
[ 38%] Built target apbs_mg
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3'
847 | MAT3(dPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3'
846 | MAT3(dPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3'
845 | MAT3(dPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3'
844 | MAT3(dPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:842:5: note: in expansion of macro 'MAT3'
842 | MAT3(dPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3'
841 | MAT3(dPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3'
840 | MAT3(dPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3'
839 | MAT3(dPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3'
838 | MAT3(dPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3'
836 | MAT3(uPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3'
835 | MAT3(uPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3'
834 | MAT3(uPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3'
833 | MAT3(uPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:831:5: note: in expansion of macro 'MAT3'
831 | MAT3(uPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3'
830 | MAT3(uPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3'
829 | MAT3(uPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3'
828 | MAT3(uPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3'
827 | MAT3(uPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3'
825 | MAT3(oPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3'
824 | MAT3(oPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3'
823 | MAT3(oPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3'
822 | MAT3(oPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:820:5: note: in expansion of macro 'MAT3'
820 | MAT3(oPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3'
819 | MAT3(oPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3'
818 | MAT3(oPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:817:5: note: in expansion of macro 'MAT3'
817 | MAT3(oPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:816:5: note: in expansion of macro 'MAT3'
816 | MAT3(oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:814:5: note: in expansion of macro 'MAT3'
814 | MAT3(xout, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:813:5: note: in expansion of macro 'MAT3'
813 | MAT3(xin, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:811:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable]
811 | double dimfac;
| ^~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.h:55,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:915:5: note: in expansion of macro 'MAT2'
915 | MAT2(pc, *nxc * *nyc * *nzc, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3'
977 | MAT3(dPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3'
976 | MAT3(dPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3'
975 | MAT3(dPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3'
974 | MAT3(dPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:972:5: note: in expansion of macro 'MAT3'
972 | MAT3( dPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3'
971 | MAT3( dPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3'
970 | MAT3( dPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3'
969 | MAT3( dPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3'
968 | MAT3( dPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3'
966 | MAT3(uPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3'
965 | MAT3(uPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3'
964 | MAT3(uPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3'
963 | MAT3(uPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:961:5: note: in expansion of macro 'MAT3'
961 | MAT3( uPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3'
960 | MAT3( uPE, *nxc, *nyc, *nzc);
| ^~~~
[ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3'
959 | MAT3( uPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3'
958 | MAT3( uPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3'
957 | MAT3( uPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3'
955 | MAT3(oPSW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3'
954 | MAT3(oPSE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3'
953 | MAT3(oPNW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3'
952 | MAT3(oPNE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:950:5: note: in expansion of macro 'MAT3'
950 | MAT3( oPW, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3'
949 | MAT3( oPE, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3'
948 | MAT3( oPS, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:947:5: note: in expansion of macro 'MAT3'
947 | MAT3( oPN, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3'
946 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable]
78 | int dy_##mat = dy; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3'
946 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable]
77 | int dx_##mat = dx; \
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:946:5: note: in expansion of macro 'MAT3'
946 | MAT3( oPC, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:944:5: note: in expansion of macro 'MAT3'
944 | MAT3(xout, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:943:5: note: in expansion of macro 'MAT3'
943 | MAT3( xin, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c: In function 'Vextrac':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:1081:5: note: in expansion of macro 'MAT3'
1081 | MAT3(xout, *nxc, *nyc, *nzc);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/matvecd.c:1080:5: note: in expansion of macro 'MAT3'
1080 | MAT3( xin, *nxf, *nyf, *nzf);
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:94:5: note: in expansion of macro 'MAT2'
94 | MAT2(iz, 50, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:298:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized]
298 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgcsd.c:557:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized]
557 | } while (*iters<*itmax && (rsnrm/rsden) > *errtol);
| ~~~~~~^~~~~~~
[ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable]
80 | int ierror = 0;
| ^~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.h:62,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:262:5: note: in expansion of macro 'MAT2'
262 | MAT2(iz, 50, nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:229:12: warning: unused variable 'tsolve' [-Wunused-variable]
229 | double tsolve = 0.0;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:228:12: warning: unused variable 'tsetupc' [-Wunused-variable]
228 | double tsetupc = 0.0;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:227:12: warning: unused variable 'tsetupf' [-Wunused-variable]
227 | double tsetupf = 0.0;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'oh' [-Wunused-variable]
226 | double oh = 0.0;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:225:12: warning: unused variable 'bf' [-Wunused-variable]
225 | double bf = 0.0;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:221:12: warning: unused variable 'epsmac' [-Wunused-variable]
221 | double epsmac = 0.0;
| ^~~~~~
[ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:78:5: note: in expansion of macro 'MAT2'
78 | MAT2(iz, 50, *nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:261:5: note: in expansion of macro 'MAT2'
261 | MAT2(iz, 50, *nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3'
623 | MAT3( fcf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3'
622 | MAT3( ccf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3'
621 | MAT3( tcf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3'
620 | MAT3(a3cf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3'
619 | MAT3(a2cf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3'
618 | MAT3(a1cf, *nxf, *nyf, *nzf);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3'
617 | MAT3(gzcf, *nxf, *nyf, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3'
616 | MAT3(gycf, *nxf, *nzf, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3'
615 | MAT3(gxcf, *nyf, *nzf, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3'
614 | MAT3( tc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3'
613 | MAT3( fc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3'
612 | MAT3( cc, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3'
611 | MAT3( a3c, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:610:5: note: in expansion of macro 'MAT3'
610 | MAT3( a2c, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:609:5: note: in expansion of macro 'MAT3'
609 | MAT3( a1c, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:608:5: note: in expansion of macro 'MAT3'
608 | MAT3( gzc, *nx, *ny, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:607:5: note: in expansion of macro 'MAT3'
607 | MAT3( gyc, *nx, *nz, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:606:5: note: in expansion of macro 'MAT3'
606 | MAT3( gxc, *ny, *nz, 4);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgsubd.c:909:5: note: in expansion of macro 'MAT2'
909 | MAT2(iz, 50, *nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:650:26: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized]
650 | + (num_narrc + num_narrc_oper) * *narrc
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:651:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized]
648 | *iretot = num_narr * *narr
| ~~~~~~~~~~~~~~~~
649 | + (num_nf + num_nf_oper) * *nf
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
650 | + (num_narrc + num_narrc_oper) * *narrc
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
651 | + n_band
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgdrvd.c:649:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized]
649 | + (num_nf + num_nf_oper) * *nf
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
[ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:61: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
61 | #pragma omp parallel for private(i,j,k)
|
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:55:5: note: in expansion of macro 'MAT3'
55 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:54:5: note: in expansion of macro 'MAT3'
54 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:73:5: note: in expansion of macro 'MAT3'
73 | MAT3(y, *nx - 2, *ny - 2, *nz - 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:72:5: note: in expansion of macro 'MAT3'
72 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:94:5: note: in expansion of macro 'MAT3'
94 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:93:5: note: in expansion of macro 'MAT3'
93 | MAT3(x, *nx - 2, *ny - 2, *nz - 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:112:5: note: in expansion of macro 'MAT3'
112 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:111:5: note: in expansion of macro 'MAT3'
111 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:131:5: note: in expansion of macro 'MAT3'
131 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:152:5: note: in expansion of macro 'MAT3'
152 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxdot':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:177:5: note: in expansion of macro 'MAT3'
177 | MAT3(y, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:176:5: note: in expansion of macro 'MAT3'
176 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vazeros':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:197: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
197 | #pragma omp parallel for private(i)
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:193:9: warning: unused variable 'nproc' [-Wunused-variable]
193 | int nproc = 1;
| ^~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:213:5: note: in expansion of macro 'MAT3'
213 | MAT3(gzc, *nx, *ny, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:212:5: note: in expansion of macro 'MAT3'
212 | MAT3(gyc, *nx, *nz, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:211:5: note: in expansion of macro 'MAT3'
211 | MAT3(gxc, *ny, *nz, 2);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:210:5: note: in expansion of macro 'MAT3'
210 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:257:5: note: in expansion of macro 'MAT3'
257 | MAT3( x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:290:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable]
290 | double xdum;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:288:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable]
288 | int n, i, ii, ipara, ivect, iflag;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:288:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
288 | int n, i, ii, ipara, ivect, iflag;
| ^~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.h:58,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vxscal':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:317:5: note: in expansion of macro 'MAT3'
317 | MAT3(x, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:332:5: note: in expansion of macro 'MAT2'
332 | MAT2(ac, *nx * *ny * *nz, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:365:5: note: in expansion of macro 'MAT3'
365 | MAT3(uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:364:5: note: in expansion of macro 'MAT3'
364 | MAT3(oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:363:5: note: in expansion of macro 'MAT3'
363 | MAT3(oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:362:5: note: in expansion of macro 'MAT3'
362 | MAT3(oC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3'
410 | MAT3(uSW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3'
409 | MAT3(uSE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3'
408 | MAT3(uNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3'
407 | MAT3(uNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3'
406 | MAT3( uS, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3'
405 | MAT3( uN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3'
404 | MAT3( uW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3'
403 | MAT3( uE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3'
402 | MAT3(oNW, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:401:5: note: in expansion of macro 'MAT3'
401 | MAT3(oNE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:400:5: note: in expansion of macro 'MAT3'
400 | MAT3( uC, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:399:5: note: in expansion of macro 'MAT3'
399 | MAT3( oN, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:398:5: note: in expansion of macro 'MAT3'
398 | MAT3( oE, *nx, *ny, *nz);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable]
79 | int dz_##mat = dz
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mikpckd.c:397:5: note: in expansion of macro 'MAT3'
397 | MAT3( oC, *nx, *ny, *nz);
| ^~~~
[ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c
[ 46%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:57:5: note: in expansion of macro 'MAT2'
57 | MAT2(abd, *lda, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mlinpckd.c:194:5: note: in expansion of macro 'MAT2'
194 | MAT2(abd, *lda, 1);
| ^~~~
[ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:91:9: warning: unused variable 'i' [-Wunused-variable]
91 | int i;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vc_vecpmg':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:161: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
161 | #pragma omp parallel for \
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
218 | int n, i, ii, ipara, ivect;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable]
218 | int n, i, ii, ipara, ivect;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:218:15: warning: unused variable 'ii' [-Wunused-variable]
218 | int n, i, ii, ipara, ivect;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:217:9: warning: unused variable 'iion' [-Wunused-variable]
217 | int iion;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:28: warning: unused variable 'fact' [-Wunused-variable]
214 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:22: warning: unused variable 'poly' [-Wunused-variable]
214 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:214:12: warning: unused variable 'argument' [-Wunused-variable]
214 | double argument, poly, fact;
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:213:29: warning: unused variable 'am_pos' [-Wunused-variable]
213 | double am_zero, am_neg, am_pos;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:213:21: warning: unused variable 'am_neg' [-Wunused-variable]
213 | double am_zero, am_neg, am_pos;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:212:18: warning: unused variable 'zu2' [-Wunused-variable]
212 | double zcf2, zu2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:212:12: warning: unused variable 'zcf2' [-Wunused-variable]
212 | double zcf2, zu2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:211:9: warning: unused variable 'ideg' [-Wunused-variable]
211 | int ideg;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:340:9: warning: unused variable 'n' [-Wunused-variable]
340 | int n = *nx * *ny * *nz;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:339:9: warning: unused variable 'i' [-Wunused-variable]
339 | int i;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:378: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
378 | #pragma omp parallel for \
|
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:355:28: warning: unused variable 'fact' [-Wunused-variable]
355 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:355:22: warning: unused variable 'poly' [-Wunused-variable]
355 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:352:9: warning: unused variable 'ideg' [-Wunused-variable]
352 | int ideg, iion;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:428:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable]
428 | int ipara, ivect;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:428:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable]
428 | int ipara, ivect;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:427:15: warning: unused variable 'ii' [-Wunused-variable]
427 | int n, i, ii;
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:28: warning: unused variable 'fact' [-Wunused-variable]
424 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:22: warning: unused variable 'poly' [-Wunused-variable]
424 | double argument, poly, fact;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:424:12: warning: unused variable 'argument' [-Wunused-variable]
424 | double argument, poly, fact;
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:423:29: warning: unused variable 'am_pos' [-Wunused-variable]
423 | double am_zero, am_neg, am_pos;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:423:21: warning: unused variable 'am_neg' [-Wunused-variable]
423 | double am_zero, am_neg, am_pos;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:422:18: warning: unused variable 'zu2' [-Wunused-variable]
422 | double zcf2, zu2;
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:422:12: warning: unused variable 'zcf2' [-Wunused-variable]
422 | double zcf2, zu2;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:421:15: warning: unused variable 'iion' [-Wunused-variable]
421 | int ideg, iion;
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.c:421:9: warning: unused variable 'ideg' [-Wunused-variable]
421 | int ideg, iion;
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:56:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vfnewton':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2'
77 | MAT2( iz, 50, 1);
| ^~~~
[ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vnewton':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2'
187 | MAT2(iz, 50, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c: In function 'Vgetjac':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2'
560 | MAT2(iz, 50, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:81:9: warning: unused variable 'maxlev' [-Wunused-variable]
81 | int maxlev; /// @todo: Doc
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:80:9: warning: unused variable 'ierror' [-Wunused-variable]
80 | int ierror; /// @todo: Doc
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'i' [-Wunused-variable]
218 | int i;
| ^
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:216:12: warning: unused variable 'orsnrm_t' [-Wunused-variable]
216 | double orsnrm_t;
| ^~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:215:12: warning: unused variable 'rsden_t' [-Wunused-variable]
215 | double rsden_t;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:214:12: warning: unused variable 'rsnrm_t' [-Wunused-variable]
214 | double rsnrm_t;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:213:9: warning: unused variable 'iters_t' [-Wunused-variable]
213 | int iters_t;
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:212:9: warning: unused variable 'iok_t' [-Wunused-variable]
212 | int iok_t;
| ^~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:210:9: warning: unused variable 'numlev' [-Wunused-variable]
210 | int numlev;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:205:12: warning: unused variable 'tsolve' [-Wunused-variable]
205 | double tsolve; /// @todo: Doc
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:204:12: warning: unused variable 'tsetupc' [-Wunused-variable]
204 | double tsetupc; /// @todo: Doc
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:203:12: warning: unused variable 'tsetupf' [-Wunused-variable]
203 | double tsetupf; /// @todo: Doc
| ^~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'oh' [-Wunused-variable]
202 | double oh; /// @todo: Doc
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:201:12: warning: unused variable 'bf' [-Wunused-variable]
201 | double bf; /// @todo: Doc
| ^~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:199:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable]
199 | double omegal; /// @todo: Doc
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/newdrvd.c:197:12: warning: unused variable 'epsmac' [-Wunused-variable]
197 | double epsmac; /// @todo: Doc
| ^~~~~~
[ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c
[ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.c
[ 52%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -fPIC -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vpower':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:69:5: note: in expansion of macro 'MAT2'
69 | MAT2(iz, 50, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:66:9: warning: unused variable 'skipIters' [-Wunused-variable]
66 | int skipIters = 0;
| ^~~~~~~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vipower':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:183:5: note: in expansion of macro 'MAT2'
183 | MAT2(iz, 50, 1);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c: In function 'Vmpower':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/powerd.c:306:5: note: in expansion of macro 'MAT2'
306 | MAT2(iz, 50, 1);
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:74:5: note: in expansion of macro 'MAT2'
74 | MAT2(iz, 50, *nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:69:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable]
69 | double errd;
| ^~~~
In file included from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/smoothd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.h:57,
from /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:50:
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas':
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable]
66 | int dy_##mat = dy
| ^~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:177:5: note: in expansion of macro 'MAT2'
177 | MAT2(iz, 50, *nlev);
| ^~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:166:33: warning: unused variable 'ivariv' [-Wunused-variable]
166 | int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid;
| ^~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:354:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized]
354 | Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mgfasd.c:592:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized]
592 | if ((rsnrm / rsden) <= *errtol)
| ~~~~~~~^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 52%] Built target apbs_pmgc
make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/CMakeFiles/apbs.dir/DependInfo.cmake --color=
Scanning dependencies of target apbs
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build
make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
[ 53%] Linking C shared library ../lib/libapbs.so
cd /builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1
/usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libapbs.so.1 -o ../lib/libapbs.so.1 generic/CMakeFiles/apbs_generic.dir/nosh.c.o generic/CMakeFiles/apbs_generic.dir/mgparm.c.o generic/CMakeFiles/apbs_generic.dir/femparm.c.o generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o generic/CMakeFiles/apbs_generic.dir/bemparm.c.o generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o generic/CMakeFiles/apbs_generic.dir/apolparm.c.o generic/CMakeFiles/apbs_generic.dir/vacc.c.o generic/CMakeFiles/apbs_generic.dir/valist.c.o generic/CMakeFiles/apbs_generic.dir/vatom.c.o generic/CMakeFiles/apbs_generic.dir/vpbe.c.o generic/CMakeFiles/apbs_generic.dir/vcap.c.o generic/CMakeFiles/apbs_generic.dir/vclist.c.o generic/CMakeFiles/apbs_generic.dir/vstring.c.o generic/CMakeFiles/apbs_generic.dir/vparam.c.o generic/CMakeFiles/apbs_generic.dir/vgreen.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o mg/CMakeFiles/apbs_mg.dir/vgrid.c.o mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o mg/CMakeFiles/apbs_mg.dir/vopot.c.o mg/CMakeFiles/apbs_mg.dir/vpmg.c.o mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o
/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:73: multiple definition of `sconc'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:73: first defined here
/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:72: multiple definition of `charge'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:72: first defined here
/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:71: multiple definition of `nion'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:71: first defined here
/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: multiple definition of `relSize'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: first defined here
/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: multiple definition of `vol'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: first defined here
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/usr/bin/ld: pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: multiple definition of `conc2'; pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs/src/pmgc/mypdec.h:70: first defined here
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collect2: error: ld returned 1 exit status
make[2]: *** [src/CMakeFiles/apbs.dir/build.make:174: lib/libapbs.so.1] Error 1
make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make[1]: *** [CMakeFiles/Makefile2:329: src/CMakeFiles/apbs.dir/all] Error 2
make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-apbs-1.5/apbs'
make: *** [Makefile:153: all] Error 2
error: Bad exit status from /var/tmp/rpm-tmp.fFuEhI (%build)
RPM build errors:
Bad exit status from /var/tmp/rpm-tmp.fFuEhI (%build)
Child return code was: 1
EXCEPTION: [Error()]
Traceback (most recent call last):
File "/usr/lib/python3.8/site-packages/mockbuild/trace_decorator.py", line 95, in trace
result = func(*args, **kw)
File "/usr/lib/python3.8/site-packages/mockbuild/util.py", line 746, in do_with_status
raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode)
mockbuild.exception.Error: Command failed:
# bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/apbs.spec