Mock Version: 2.15
Mock Version: 2.15
Mock Version: 2.15
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f37-build-647313-72651/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3f81fc3370>timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1661817600
Wrote: /builddir/build/SRPMS/python-pysam-0.19.1-3.fc37.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f37-build-647313-72651/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3f81fc3370>timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1661817600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.exYJOi
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pysam-0.19.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysam-0.19.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pysam-0.19.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -rf pysam.egg-info
++ grep -rl '/\* Generated by Cython'
+ rm pysam/libcvcf.c pysam/libcfaidx.c pysam/libcalignedsegment.c pysam/libcbcftools.c pysam/libcsamfile.c pysam/libcutils.c pysam/libcsamtools.c pysam/libcalignmentfile.c pysam/libchtslib.c pysam/libctabix.c pysam/libcbgzf.c pysam/libctabixproxies.c pysam/libcbcf.c
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.am0UDv
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysam-0.19.1
+ FORCE_CYTHON=1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (env) CC=gcc
# pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection
# pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
checking for curl/curl.h... no
checking for curl_easy_pause in -lcurl... no
checking for curl_easy_init in -lcurl... no
configure: error: libcurl library not found
Support for HTTPS and other SSL-based URLs requires routines from the libcurl
library <http://curl.se/libcurl/>.  Building HTSlib with libcurl enabled
requires libcurl development files to be installed on the build machine; you
may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on
Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions
or Cygwin) is installed.
Either configure with --disable-libcurl or resolve this error to build HTSlib.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
configure: WARNING: GCS support not enabled: requires libcurl support
configure: WARNING: S3 support not enabled: requires libcurl support
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: linking htscodecs_bundled.mk to htscodecs.mk
# pysam: htslib configure options: --disable-libcurl
# pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o
# pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm
# pysam: htslib_config PLATFORM=default
# pysam: config_option: ENABLE_GCS=0
# pysam: config_option: ENABLE_PLUGINS=0
# pysam: config_option: ENABLE_S3=0
# pysam: config_option: HAVE_COMMONCRYPTO=0
# pysam: config_option: HAVE_HMAC=0
# pysam: config_option: HAVE_LIBBZ2=1
# pysam: config_option: HAVE_LIBCURL=0
# pysam: config_option: HAVE_LIBDEFLATE=0
# pysam: config_option: HAVE_LIBLZMA=1
# pysam: config_option: HAVE_MMAP=1
running build
running build_py
creating build
creating build/lib.linux-riscv64-cpython-311
creating build/lib.linux-riscv64-cpython-311/pysam
copying pysam/version.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/__init__.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/config.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/bcftools.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/samtools.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/utils.py -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/Pileup.py -> build/lib.linux-riscv64-cpython-311/pysam
creating build/lib.linux-riscv64-cpython-311/pysam/include
copying pysam/include/__init__.py -> build/lib.linux-riscv64-cpython-311/pysam/include
package init file 'samtools/__init__.py' not found (or not a regular file)
package init file 'bcftools/__init__.py' not found (or not a regular file)
package init file 'htslib/__init__.py' not found (or not a regular file)
package init file 'htslib/htslib/__init__.py' not found (or not a regular file)
copying pysam/libcalignedsegment.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcsamfile.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libctabixproxies.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcbcf.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcbcftools.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcsamtools.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libchtslib.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcvcf.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcalignmentfile.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcfaidx.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcutils.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libctabix.pxd -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/pysam_util.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/version.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/htslib_util.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/cbcftools_util.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/pysam_stream.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/csamtools_util.h -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/py.typed -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcutils.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcsamfile.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcfaidx.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcsamtools.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcbgzf.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcvcf.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcalignedsegment.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libctabixproxies.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libchtslib.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcalignmentfile.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcbcftools.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libcbcf.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/libctabix.pyi -> build/lib.linux-riscv64-cpython-311/pysam
copying pysam/version.pyi -> build/lib.linux-riscv64-cpython-311/pysam
creating build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/bam_plbuf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/bedidx.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/stats_isize.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/config.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/samtools.pysam.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/sam_opts.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/samtools.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/consensus_pileup.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/bam_lpileup.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/sample.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/bam_ampliconclip.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/splaysort.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/tmp_file.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
copying samtools/bam.h -> build/lib.linux-riscv64-cpython-311/pysam/include/samtools
creating build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/str_finder.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/call.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/utlist.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/prob1.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/bam2bcf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/extsort.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/dbuf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/abuf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/hclust.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/hex.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/kmin.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/config.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/HMM.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/rbuf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/mw.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/filter.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/convert.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/vcfbuf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/bam_sample.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/variantkey.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/gvcf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/tsv2vcf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/bcftools.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/ploidy.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/regidx.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/khash_str2str.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/smpl_ilist.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/cols.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/vcmp.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/dist.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/bin.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/kheap.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
copying bcftools/bcftools.pysam.h -> build/lib.linux-riscv64-cpython-311/pysam/include/bcftools
creating build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/hts_internal.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/config.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/textutils_internal.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/hfile_internal.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/header.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/sam_internal.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/bcf_sr_sort.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
copying htslib/thread_pool_internal.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib
creating build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kstring.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_defs.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kbitset.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/faidx.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_endian.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcf_sweep.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/khash.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kfunc.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/vcfutils.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/bgzf.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/klist.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/khash_str2int.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hfile.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/ksort.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_log.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kseq.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/regidx.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/knetfile.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/cram.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_expr.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/tbx.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/sam.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/hts_os.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/kroundup.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
copying htslib/htslib/thread_pool.h -> build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib
running build_ext
cythoning pysam/libchtslib.pyx to pysam/libchtslib.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libchtslib.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcsamtools.pyx to pysam/libcsamtools.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcsamtools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbcftools.pyx to pysam/libcbcftools.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbcftools.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcutils.pyx to pysam/libcutils.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcutils.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcalignmentfile.pyx to pysam/libcalignmentfile.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcalignmentfile.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: pysam/libcalignmentfile.pyx:2573:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2578:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2583:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2622:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2627:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
warning: pysam/libcalignmentfile.pyx:2632:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation
cythoning pysam/libcsamfile.pyx to pysam/libcsamfile.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcsamfile.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcalignedsegment.pyx to pysam/libcalignedsegment.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcalignedsegment.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libctabix.pyx to pysam/libctabix.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libctabix.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcfaidx.pyx to pysam/libcfaidx.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcfaidx.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbcf.pyx to pysam/libcbcf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbcf.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcbgzf.pyx to pysam/libcbgzf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcbgzf.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libctabixproxies.pyx to pysam/libctabixproxies.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libctabixproxies.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning pysam/libcvcf.pyx to pysam/libcvcf.c
/usr/lib64/python3.11/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/pysam-0.19.1/pysam/libcvcf.pxd
  tree = Parsing.p_module(s, pxd, full_module_name)
warning: pysam/libcvcf.pyx:1083:27: Unreachable code
creating htslib/config_vars.h for 'pysam.libchtslib' extension
building 'pysam.libchtslib' extension
creating build/temp.linux-riscv64-cpython-311
creating build/temp.linux-riscv64-cpython-311/htslib
creating build/temp.linux-riscv64-cpython-311/htslib/cram
creating build/temp.linux-riscv64-cpython-311/htslib/htscodecs
creating build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs
creating build/temp.linux-riscv64-cpython-311/pysam
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/bcf_sr_sort.c -o build/temp.linux-riscv64-cpython-311/htslib/bcf_sr_sort.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/bgzf.c -o build/temp.linux-riscv64-cpython-311/htslib/bgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_codecs.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_codecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_decode.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_decode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_encode.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_encode.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_external.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_external.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_index.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_index.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_io.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_io.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/cram_stats.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_stats.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/mFILE.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/mFILE.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/open_trace_file.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/open_trace_file.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/pooled_alloc.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/pooled_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/cram/string_alloc.c -o build/temp.linux-riscv64-cpython-311/htslib/cram/string_alloc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/errmod.c -o build/temp.linux-riscv64-cpython-311/htslib/errmod.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/faidx.c -o build/temp.linux-riscv64-cpython-311/htslib/faidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/header.c -o build/temp.linux-riscv64-cpython-311/htslib/header.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hfile.c -o build/temp.linux-riscv64-cpython-311/htslib/hfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts.c -o build/temp.linux-riscv64-cpython-311/htslib/hts.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts_expr.c -o build/temp.linux-riscv64-cpython-311/htslib/hts_expr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/hts_os.c -o build/temp.linux-riscv64-cpython-311/htslib/hts_os.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/arith_dynamic.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/arith_dynamic.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/fqzcomp_qual.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/fqzcomp_qual.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/htscodecs.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/htscodecs.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/pack.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/pack.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rANS_static.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rANS_static.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rANS_static4x16pr.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rANS_static4x16pr.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
In file included from htslib/htscodecs/htscodecs/rANS_static4x16pr.c:74:
In function ‘RansEncPutSymbol’,
    inlined from ‘rans_compress_O1_4x16.isra.0’ at htslib/htscodecs/htscodecs/rANS_static4x16pr.c:835:5:
htslib/htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized]
  303 |     *pptr = (uint8_t *)(ptr-c);
      |                        ~~~~^~~
htslib/htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’:
htslib/htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here
  793 |     uint8_t* ptr = out_end;
      |              ^~~
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/rle.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rle.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/htscodecs/htscodecs/tokenise_name3.c -o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/tokenise_name3.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/kfunc.c -o build/temp.linux-riscv64-cpython-311/htslib/kfunc.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/kstring.c -o build/temp.linux-riscv64-cpython-311/htslib/kstring.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/md5.c -o build/temp.linux-riscv64-cpython-311/htslib/md5.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/multipart.c -o build/temp.linux-riscv64-cpython-311/htslib/multipart.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/probaln.c -o build/temp.linux-riscv64-cpython-311/htslib/probaln.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/realn.c -o build/temp.linux-riscv64-cpython-311/htslib/realn.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/regidx.c -o build/temp.linux-riscv64-cpython-311/htslib/regidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/region.c -o build/temp.linux-riscv64-cpython-311/htslib/region.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/sam.c -o build/temp.linux-riscv64-cpython-311/htslib/sam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/synced_bcf_reader.c -o build/temp.linux-riscv64-cpython-311/htslib/synced_bcf_reader.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/tbx.c -o build/temp.linux-riscv64-cpython-311/htslib/tbx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/textutils.c -o build/temp.linux-riscv64-cpython-311/htslib/textutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/thread_pool.c -o build/temp.linux-riscv64-cpython-311/htslib/thread_pool.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcf.c -o build/temp.linux-riscv64-cpython-311/htslib/vcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcf_sweep.c -o build/temp.linux-riscv64-cpython-311/htslib/vcf_sweep.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c htslib/vcfutils.c -o build/temp.linux-riscv64-cpython-311/htslib/vcfutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-riscv64-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-riscv64-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/htslib/bcf_sr_sort.o build/temp.linux-riscv64-cpython-311/htslib/bgzf.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_codecs.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_decode.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_encode.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_external.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_index.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_io.o build/temp.linux-riscv64-cpython-311/htslib/cram/cram_stats.o build/temp.linux-riscv64-cpython-311/htslib/cram/mFILE.o build/temp.linux-riscv64-cpython-311/htslib/cram/open_trace_file.o build/temp.linux-riscv64-cpython-311/htslib/cram/pooled_alloc.o build/temp.linux-riscv64-cpython-311/htslib/cram/string_alloc.o build/temp.linux-riscv64-cpython-311/htslib/errmod.o build/temp.linux-riscv64-cpython-311/htslib/faidx.o build/temp.linux-riscv64-cpython-311/htslib/header.o build/temp.linux-riscv64-cpython-311/htslib/hfile.o build/temp.linux-riscv64-cpython-311/htslib/hts.o build/temp.linux-riscv64-cpython-311/htslib/hts_expr.o build/temp.linux-riscv64-cpython-311/htslib/hts_os.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/arith_dynamic.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/fqzcomp_qual.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/htscodecs.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/pack.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rANS_static.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rANS_static4x16pr.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/rle.o build/temp.linux-riscv64-cpython-311/htslib/htscodecs/htscodecs/tokenise_name3.o build/temp.linux-riscv64-cpython-311/htslib/kfunc.o build/temp.linux-riscv64-cpython-311/htslib/kstring.o build/temp.linux-riscv64-cpython-311/htslib/md5.o build/temp.linux-riscv64-cpython-311/htslib/multipart.o build/temp.linux-riscv64-cpython-311/htslib/probaln.o build/temp.linux-riscv64-cpython-311/htslib/realn.o build/temp.linux-riscv64-cpython-311/htslib/regidx.o build/temp.linux-riscv64-cpython-311/htslib/region.o build/temp.linux-riscv64-cpython-311/htslib/sam.o build/temp.linux-riscv64-cpython-311/htslib/synced_bcf_reader.o build/temp.linux-riscv64-cpython-311/htslib/tbx.o build/temp.linux-riscv64-cpython-311/htslib/textutils.o build/temp.linux-riscv64-cpython-311/htslib/thread_pool.o build/temp.linux-riscv64-cpython-311/htslib/vcf.o build/temp.linux-riscv64-cpython-311/htslib/vcf_sweep.o build/temp.linux-riscv64-cpython-311/htslib/vcfutils.o build/temp.linux-riscv64-cpython-311/pysam/htslib_util.o build/temp.linux-riscv64-cpython-311/pysam/libchtslib.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-riscv64-cpython-311/pysam/libchtslib.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension
building 'pysam.libcsamtools' extension
creating build/temp.linux-riscv64-cpython-311/samtools
creating build/temp.linux-riscv64-cpython-311/samtools/lz4
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-riscv64-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-riscv64-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-riscv64-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcsamtools.o build/temp.linux-riscv64-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/dict.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/lz4/lz4.o build/temp.linux-riscv64-cpython-311/samtools/padding.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/phase.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/sample.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/samtools.pysam.o build/temp.linux-riscv64-cpython-311/samtools/stats.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-riscv64-cpython-311/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcsamtools.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcbcftools' extension
creating build/temp.linux-riscv64-cpython-311/bcftools
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’:
bcftools/vcfmerge.c.pysam.c:749:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  749 |         ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t));  // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/kstring.h:30,
                 from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/hts.h:37,
                 from /builddir/build/BUILD/pysam-0.19.1/htslib/htslib/vcf.h:39,
                 from bcftools/vcfmerge.c.pysam.c:35:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-riscv64-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-riscv64-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/em.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/main.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-riscv64-cpython-311/bcftools/version.c.pysam.o build/temp.linux-riscv64-cpython-311/pysam/libcbcftools.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcbcftools.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’:
bcftools/vcfmerge.c.pysam.c:749:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  749 |         ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t));  // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n
      |                                  ^
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
  556 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
building 'pysam.libcutils' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-riscv64-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/pysam_util.c -o build/temp.linux-riscv64-cpython-311/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcutils.o build/temp.linux-riscv64-cpython-311/pysam/pysam_util.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcsamtools.cpython-311-riscv64-linux-gnu -lcbcftools.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcutils.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcalignmentfile' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-riscv64-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’:
pysam/libcalignmentfile.c:28511:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
28511 |         (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0));
      |               ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’:
pysam/libcalignmentfile.c:14228:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
14228 |             (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcalignmentfile.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcalignmentfile.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcsamfile' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-riscv64-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcsamfile.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcsamfile.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcalignedsegment' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-riscv64-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcalignedsegment.c: In function ‘__pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_18fromstring’:
pysam/libcalignedsegment.c:14652:10: warning: ignoring return value of ‘sam_parse1’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
14652 |   (void)(sam_parse1((&__pyx_v_line), __pyx_v_dest->header->ptr, __pyx_v_dest->_delegate));
      |         ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcalignedsegment.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcalignedsegment.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libctabix' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-riscv64-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libctabix.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libctabix.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcfaidx' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-riscv64-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcfaidx.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcfaidx.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcbcf' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-riscv64-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’:
pysam/libcbcf.c:67612:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67612 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’:
pysam/libcbcf.c:67337:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67337 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’:
pysam/libcbcf.c:72455:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72455 |           (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr));
      |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’:
pysam/libcbcf.c:35431:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35431 |           bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcbcf.c:35457:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
35457 |           bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcbcf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcbcf.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcbgzf' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-riscv64-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcbgzf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcbgzf.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libctabixproxies' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-riscv64-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libctabixproxies.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libctabixproxies.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
building 'pysam.libcvcf' extension
gcc -Wsign-compare -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -fasynchronous-unwind-tables -fstack-clash-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -I/builddir/build/BUILD/pysam-0.19.1/htslib -I/builddir/build/BUILD/pysam-0.19.1/samtools -I/builddir/build/BUILD/pysam-0.19.1/samtools/lz4 -I/builddir/build/BUILD/pysam-0.19.1/bcftools -I/builddir/build/BUILD/pysam-0.19.1/pysam -I/builddir/build/BUILD/pysam-0.19.1 -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-riscv64-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop.0’:
pysam/libcvcf.c:25229:16: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized]
25229 |   __pyx_t_12 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_12)) __PYX_ERR(0, 873, __pyx_L1_error)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pysam/libcvcf.c:19949:10: note: ‘__pyx_v_qual’ was declared here
19949 |   double __pyx_v_qual;
      |          ^~~~~~~~~~~~
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-riscv64-cpython-311/pysam/libcvcf.o -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1/pysam -L/builddir/build/BUILD/pysam-0.19.1 -L/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-3.11/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -Lbuild/lib.linux-riscv64-cpython-311/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-311-riscv64-linux-gnu -lcutils.cpython-311-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-311/pysam/libcvcf.cpython-311-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN
++ echo /builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-cpython-311
+ PYTHONPATH=/builddir/build/BUILD/pysam-0.19.1/build/lib.linux-riscv64-cpython-311
+ sphinx-build-3 doc html
Running Sphinx v5.0.2
making output directory... done
[autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst
loading intersphinx inventory from https://docs.python.org/3.11/objects.inv...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.python.org/3.11/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.11/objects.inv (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x3f83ddc0d0>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 9 source files that are out of date
updating environment: [new config] 9 added, 0 changed, 0 removed
reading sources... [ 11%] api
reading sources... [ 22%] benchmarking
reading sources... [ 33%] developer
reading sources... [ 44%] faq
reading sources... [ 55%] glossary
reading sources... [ 66%] index
reading sources... [ 77%] installation
reading sources... [ 88%] release
reading sources... [100%] usage
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 11%] api
writing output... [ 22%] benchmarking
writing output... [ 33%] developer
writing output... [ 44%] faq
writing output... [ 55%] glossary
writing output... [ 66%] index
writing output... [ 77%] installation
writing output... [ 88%] release
writing output... [100%] usage
generating indices... genindex done
writing additional pages... search done
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.
The HTML pages are in html.
+ rm -rf html/.doctrees html/.buildinfo
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IIaDAB
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64
++ dirname /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysam-0.19.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64 --prefix /usr
# pysam: cython is available - using cythonize if necessary
# pysam: htslib mode is shared
# pysam: HTSLIB_CONFIGURE_OPTIONS=None
# pysam: (env) CC=gcc
# pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -fasynchronous-unwind-tables -fstack-clash-protection
# pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
checking for curl/curl.h... no
checking for curl_easy_pause in -lcurl... no
checking for curl_easy_init in -lcurl... no
configure: error: libcurl library not found
Support for HTTPS and other SSL-based URLs requires routines from the libcurl
library <http://curl.se/libcurl/>.  Building HTSlib with libcurl enabled
requires libcurl development files to be installed on the build machine; you
may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on
Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions
or Cygwin) is installed.
Either configure with --disable-libcurl or resolve this error to build HTSlib.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ranlib... ranlib
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking shared library type for unknown-Linux... plain .so
checking whether the compiler accepts -fvisibility=hidden... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking for gmtime_r... yes
checking for fsync... yes
checking for drand48... yes
checking for srand48_deterministic... no
checking whether fdatasync is declared... yes
checking for fdatasync... yes
checking for library containing log... -lm
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing recv... none required
checking for bzlib.h... yes
checking for BZ2_bzBuffToBuffCompress in -lbz2... yes
checking for lzma.h... yes
checking for lzma_easy_buffer_encode in -llzma... yes
checking whether htscodecs files are present... yes
checking for libdeflate.h... no
checking for libdeflate_deflate_compress in -ldeflate... no
configure: WARNING: GCS support not enabled: requires libcurl support
configure: WARNING: S3 support not enabled: requires libcurl support
checking for library containing regcomp... none required
checking whether PTHREAD_MUTEX_RECURSIVE is declared... yes
configure: creating ./config.status
config.status: creating config.mk
config.status: creating htslib.pc.tmp
config.status: creating config.h
config.status: config.h is unchanged
config.status: linking htscodecs_bundled.mk to htscodecs.mk
# pysam: htslib configure options: --disable-libcurl
# pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o
# pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm
# pysam: htslib_config PLATFORM=default
# pysam: config_option: ENABLE_GCS=0
# pysam: config_option: ENABLE_PLUGINS=0
# pysam: config_option: ENABLE_S3=0
# pysam: config_option: HAVE_COMMONCRYPTO=0
# pysam: config_option: HAVE_HMAC=0
# pysam: config_option: HAVE_LIBBZ2=1
# pysam: config_option: HAVE_LIBCURL=0
# pysam: config_option: HAVE_LIBDEFLATE=0
# pysam: config_option: HAVE_LIBLZMA=1
# pysam: config_option: HAVE_MMAP=1
running install
/usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running install_lib
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/version.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcutils.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/pysam_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignedsegment.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignedsegment.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/version.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/htslib_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabixproxies.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcfaidx.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcftools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcf.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbgzf.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignmentfile.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabix.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/py.typed -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamtools.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamtools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/config.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libchtslib.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcvcf.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcvcf.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/cbcftools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/bcftools.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignmentfile.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbgzf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/samtools.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcvcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/pysam_stream.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignedsegment.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcutils.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/csamtools_util.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/str_finder.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/call.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/utlist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/prob1.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/bam2bcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/extsort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/dbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/abuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/hclust.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/hex.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/kmin.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/HMM.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/rbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/mw.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/filter.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/convert.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/vcfbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/bam_sample.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/variantkey.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/gvcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/tsv2vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/bcftools.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/ploidy.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/khash_str2str.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/smpl_ilist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/cols.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/vcmp.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/dist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/bin.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/kheap.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
copying build/lib.linux-riscv64-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/bcftools
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/hts_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/kstring.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/kbitset.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/faidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/vcf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/khash.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/kfunc.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/bgzf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/klist.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hfile.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/ksort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts_log.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/kseq.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/regidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/knetfile.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/cram.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/tbx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/sam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/hts_os.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/kroundup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/textutils_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/hfile_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/header.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/sam_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/htslib/thread_pool_internal.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/htslib
copying build/lib.linux-riscv64-cpython-311/pysam/include/__init__.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/bam_plbuf.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/bedidx.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/stats_isize.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/config.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/samtools.pysam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/sam_opts.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/samtools.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/consensus_pileup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/bam_lpileup.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/sample.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/splaysort.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/tmp_file.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/include/samtools/bam.h -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/samtools
copying build/lib.linux-riscv64-cpython-311/pysam/libcfaidx.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabixproxies.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libchtslib.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamtools.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcalignmentfile.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabixproxies.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcsamfile.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/utils.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcfaidx.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcftools.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libchtslib.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcutils.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabix.pxd -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcftools.cpython-311-riscv64-linux-gnu.so -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libcbcf.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/libctabix.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/Pileup.py -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
copying build/lib.linux-riscv64-cpython-311/pysam/version.pyi -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam
creating /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/config.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/version.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/Pileup.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/samtools.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/utils.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
copying build/lib.linux-riscv64-cpython-311/pysam/__pycache__/__init__.cpython-311.pyc -> /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/__pycache__
byte-compiling /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/bcftools.py to bcftools.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/include/__init__.py to __init__.cpython-311.pyc
writing byte-compilation script '/tmp/tmpxblas4v5.py'
/usr/bin/python3 /tmp/tmpxblas4v5.py
removing /tmp/tmpxblas4v5.py
running install_egg_info
running egg_info
creating pysam.egg-info
writing pysam.egg-info/PKG-INFO
writing dependency_links to pysam.egg-info/dependency_links.txt
writing top-level names to pysam.egg-info/top_level.txt
writing manifest file 'pysam.egg-info/SOURCES.txt'
package init file 'samtools/__init__.py' not found (or not a regular file)
package init file 'bcftools/__init__.py' not found (or not a regular file)
package init file 'htslib/__init__.py' not found (or not a regular file)
package init file 'htslib/htslib/__init__.py' not found (or not a regular file)
reading manifest file 'pysam.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
no previously-included directories found matching 'tests/'
adding license file 'COPYING'
adding license file 'AUTHORS'
writing manifest file 'pysam.egg-info/SOURCES.txt'
Copying pysam.egg-info to /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam-0.19.1-py3.11.egg-info
running install_scripts
+ rm -rfv /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/bin/__pycache__
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.19.1-3.fc37 --unique-debug-suffix -0.19.1-3.fc37.riscv64 --unique-debug-src-base python-pysam-0.19.1-3.fc37.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/pysam-0.19.1
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcalignedsegment.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcalignmentfile.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcbcftools.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcbcf.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcbgzf.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcfaidx.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libchtslib.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcsamfile.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcsamtools.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libctabix.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libctabixproxies.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcutils.cpython-311-riscv64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11/site-packages/pysam/libcvcf.cpython-311-riscv64-linux-gnu.so
original debug info size: 77908kB, size after compression: 76596kB
/usr/bin/sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match.
41871 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/lib/debug/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: python3-pysam-0.19.1-3.fc37.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1u9AEW
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python3-pysam
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python3-pysam
+ cp -pr README.rst /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python3-pysam
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Pd398R
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ LICENSEDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/licenses/python3-pysam
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/licenses/python3-pysam
+ cp -pr COPYING /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/licenses/python3-pysam
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(bcftools) = 1.15.1 bundled(htslib) = 1.15.1 bundled(samtools) = 1.15.1 libcalignedsegment.cpython-311-riscv64-linux-gnu.so()(64bit) libcalignmentfile.cpython-311-riscv64-linux-gnu.so()(64bit) libcbcf.cpython-311-riscv64-linux-gnu.so()(64bit) libcbcftools.cpython-311-riscv64-linux-gnu.so()(64bit) libcbgzf.cpython-311-riscv64-linux-gnu.so()(64bit) libcfaidx.cpython-311-riscv64-linux-gnu.so()(64bit) libchtslib.cpython-311-riscv64-linux-gnu.so()(64bit) libcsamfile.cpython-311-riscv64-linux-gnu.so()(64bit) libcsamtools.cpython-311-riscv64-linux-gnu.so()(64bit) libctabix.cpython-311-riscv64-linux-gnu.so()(64bit) libctabixproxies.cpython-311-riscv64-linux-gnu.so()(64bit) libcutils.cpython-311-riscv64-linux-gnu.so()(64bit) libcvcf.cpython-311-riscv64-linux-gnu.so()(64bit) python-pysam = 0.19.1-3.fc37 python3-pysam = 0.19.1-3.fc37 python3-pysam(riscv-64) = 0.19.1-3.fc37 python3.11-pysam = 0.19.1-3.fc37 python3.11dist(pysam) = 0.19.1 python3dist(pysam) = 0.19.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libcbcftools.cpython-311-riscv64-linux-gnu.so()(64bit) libchtslib.cpython-311-riscv64-linux-gnu.so()(64bit) libcsamtools.cpython-311-riscv64-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libz.so.1()(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Obsoletes: python-pysam < 0.19.1-3.fc37
Processing files: python3-pysam-devel-0.19.1-3.fc37.riscv64
Provides: python-pysam-devel = 0.19.1-3.fc37 python3-pysam-devel = 0.19.1-3.fc37 python3-pysam-devel(riscv-64) = 0.19.1-3.fc37 python3.11-pysam-devel = 0.19.1-3.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11
Processing files: python-pysam-doc-0.19.1-3.fc37.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.RXaoZ2
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python-pysam-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python-pysam-doc
+ cp -pr html /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64/usr/share/doc/python-pysam-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pysam-doc = 0.19.1-3.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python-pysam-debugsource-0.19.1-3.fc37.riscv64
Provides: python-pysam-debugsource = 0.19.1-3.fc37 python-pysam-debugsource(riscv-64) = 0.19.1-3.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-pysam-debuginfo-0.19.1-3.fc37.riscv64
Provides: debuginfo(build-id) = 0b418be5f5b98f7ab3ea955625ad53513f81fd24 debuginfo(build-id) = 0d124d16b1cc5c63561b925f65590a7d6afc4edf debuginfo(build-id) = 27a671e25618eff7c53443dae01ac7d4f2ab9e9c debuginfo(build-id) = 352ab1aa31ca329b5be38fa9d93b5118ba75367f debuginfo(build-id) = 48fcd9f7b5deec852a6748c6496a3c061c94d587 debuginfo(build-id) = 5329e026f20796e2e374628159b505027123a4df debuginfo(build-id) = 5e7d63eeed8e0f50e776d98e9702747dfb48c251 debuginfo(build-id) = 5ed55f8d8b5c0c1278a686a9529197b01f3b315d debuginfo(build-id) = a81b762cae408d2dce041e7a6d99527f9c94ebd4 debuginfo(build-id) = b74e9bd0334d8ac950a5dfadc163acd945f25158 debuginfo(build-id) = c77cad8a8c13a6a1903068f7b0560246dc916012 debuginfo(build-id) = f28c8b97940d760bf36fa0b3b46869b26d6fb3dd debuginfo(build-id) = f5269d6675842966359943340db7453069da703e libcalignedsegment.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcalignmentfile.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcbcf.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcbcftools.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcbgzf.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcfaidx.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libchtslib.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcsamfile.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcsamtools.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libctabix.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libctabixproxies.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcutils.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) libcvcf.cpython-311-riscv64-linux-gnu.so-0.19.1-3.fc37.riscv64.debug()(64bit) python-pysam-debuginfo = 0.19.1-3.fc37 python3-pysam-debuginfo = 0.19.1-3.fc37 python3-pysam-debuginfo(riscv-64) = 0.19.1-3.fc37 python3.11-pysam-debuginfo = 0.19.1-3.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python-pysam-debugsource(riscv-64) = 0.19.1-3.fc37
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64
Wrote: /builddir/build/RPMS/python-pysam-doc-0.19.1-3.fc37.noarch.rpm
Wrote: /builddir/build/RPMS/python3-pysam-devel-0.19.1-3.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/python3-pysam-0.19.1-3.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.19.1-3.fc37.riscv64.rpm
Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.19.1-3.fc37.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Hw1O0F
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysam-0.19.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pysam-0.19.1-3.fc37.riscv64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.94N0Qv
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pysam-0.19.1 pysam-0.19.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0