Mock Version: 1.4.13
Mock Version: 1.4.13
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-BiocParallel.spec'], chrootPath='/var/lib/mock/f31-build-96873-32868/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x20023f23c8>timeout=432000uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-BiocParallel.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1565568000
Wrote: /builddir/build/SRPMS/R-BiocParallel-1.16.5-3.fc31.src.rpm
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-BiocParallel.spec'], chrootPath='/var/lib/mock/f31-build-96873-32868/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x20023f23c8>timeout=432000uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-BiocParallel.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1565568000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.G77nOR
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf BiocParallel
+ /usr/bin/mkdir -p BiocParallel
+ cd BiocParallel
+ /usr/bin/gzip -dc /builddir/build/SOURCES/BiocParallel_1.16.5.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (R-BiocParallel-link-with-lrt.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .lrt --fuzz=0
+ chmod -x BiocParallel/inst/snow/RMPInode.R
+ pushd BiocParallel
+ autoreconf -ifv
BUILDSTDERR: autoreconf: Entering directory `.'
BUILDSTDERR: autoreconf: configure.ac: not using Gettext
BUILDSTDERR: autoreconf: running: aclocal --force 
BUILDSTDERR: autoreconf: configure.ac: tracing
BUILDSTDERR: autoreconf: configure.ac: not using Libtool
BUILDSTDERR: autoreconf: running: /usr/bin/autoconf --force
BUILDSTDERR: autoreconf: configure.ac: not using Autoheader
BUILDSTDERR: autoreconf: configure.ac: not using Automake
BUILDSTDERR: autoreconf: Leaving directory `.'
+ popd
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Patch #0 (R-BiocParallel-link-with-lrt.patch):
patching file BiocParallel/configure.ac
patching file BiocParallel/src/Makevars.in
~/build/BUILD/BiocParallel/BiocParallel ~/build/BUILD/BiocParallel
~/build/BUILD/BiocParallel
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.covbGT
+ umask 022
+ cd /builddir/build/BUILD
+ cd BiocParallel
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bgsB6Q
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64
+ cd BiocParallel
+ mkdir -p /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library BiocParallel
BUILDSTDERR: * installing *source* package 'BiocParallel' ...
BUILDSTDERR: ** using staged installation
BUILDSTDERR: ** libs
BUILDSTDERR: In file included from /usr/share/R/library/BH/include/boost/config/header_deprecated.hpp:18,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/pending/integer_log2.hpp:5,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/random/detail/integer_log2.hpp:19,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/random/detail/seed_impl.hpp:26,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/random/mersenne_twister.hpp:30,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/uuid/random_generator.hpp:17,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
BUILDSTDERR:                  from ipcmutex.cpp:3:
BUILDSTDERR: /usr/share/R/library/BH/include/boost/config/pragma_message.hpp:24:34: note: #pragma message: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead.
BUILDSTDERR:    24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
BUILDSTDERR:       |                                  ^~~~~~~
BUILDSTDERR: /usr/share/R/library/BH/include/boost/config/header_deprecated.hpp:23:37: note: in expansion of macro 'BOOST_PRAGMA_MESSAGE'
BUILDSTDERR:    23 | # define BOOST_HEADER_DEPRECATED(a) BOOST_PRAGMA_MESSAGE("This header is deprecated. Use " a " instead.")
BUILDSTDERR:       |                                     ^~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: /usr/share/R/library/BH/include/boost/pending/integer_log2.hpp:7:1: note: in expansion of macro 'BOOST_HEADER_DEPRECATED'
BUILDSTDERR:     7 | BOOST_HEADER_DEPRECATED("<boost/integer/integer_log2.hpp>");
BUILDSTDERR:       | ^~~~~~~~~~~~~~~~~~~~~~~
BUILDSTDERR: In file included from /usr/share/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/arg.hpp:25,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/placeholders.hpp:24,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/apply.hpp:24,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/fold.hpp:20,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/remove_if.hpp:18,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/mpl/remove.hpp:18,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/function_types/components.hpp:44,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:11,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/tti/has_member_function.hpp:15,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/uuid/random_generator.hpp:20,
BUILDSTDERR:                  from /usr/share/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
BUILDSTDERR:                  from ipcmutex.cpp:3:
BUILDSTDERR: /usr/share/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
BUILDSTDERR:   194 | failed ************ (Pred::************
BUILDSTDERR:       |                     ^
BUILDSTDERR: /usr/share/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
BUILDSTDERR:   199 | failed ************ (boost::mpl::not_<Pred>::************
BUILDSTDERR:       |                     ^
BUILDSTDERR: installing to /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library/00LOCK-BiocParallel/00new/BiocParallel/libs
BUILDSTDERR: ** R
BUILDSTDERR: ** inst
BUILDSTDERR: ** byte-compile and prepare package for lazy loading
BUILDSTDERR: ** help
BUILDSTDERR: *** installing help indices
BUILDSTDERR:     finding HTML links ... done
BUILDSTDERR: ** building package indices
BUILDSTDERR: ** installing vignettes
BUILDSTDERR: ** testing if installed package can be loaded from temporary location
BUILDSTDERR: ** checking absolute paths in shared objects and dynamic libraries
BUILDSTDERR: ** testing if installed package can be loaded from final location
BUILDSTDERR: ** testing if installed package keeps a record of temporary installation path
BUILDSTDERR: * DONE (BiocParallel)
+ test -d BiocParallel/src
+ cd BiocParallel/src
+ rm -f ipcmutex.o BiocParallel.so
+ rm -rf /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library/R.css
+ /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 1.16.5-3.fc31 --unique-debug-suffix -1.16.5-3.fc31.riscv64 --unique-debug-src-base R-BiocParallel-1.16.5-3.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/BiocParallel
BUILDSTDERR: 9 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for shm_open in -lrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
g++ -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I"/usr/share/R/library/BH/include" -I/usr/local/include  -fpic  -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection  -c ipcmutex.cpp -o ipcmutex.o
g++ -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o BiocParallel.so ipcmutex.o -lrt -L/usr/lib64/R/lib -lR
  converting help for package 'BiocParallel'
    BatchJobsParam-class                    html  
    BatchtoolsParam-class                   html  
    BiocParallel-package                    html  
    BiocParallelParam-class                 html  
    DoparParam-class                        html  
    MulticoreParam-class                    html  
    SerialParam-class                       html  
    SnowParam-class                         html  
    bpaggregate                             html  
    bpiterate                               html  
    bplapply                                html  
    bploop                                  html  
    bpmapply                                html  
    bpok                                    html  
    bpschedule                              html  
    bptry                                   html  
    bpvalidate                              html  
    bpvec                                   html  
    bpvectorize                             html  
    ipcmutex                                html  
    register                                html  
explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library/BiocParallel/libs/BiocParallel.so
extracting debug info from /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64/usr/lib64/R/library/BiocParallel/libs/BiocParallel.so
original debug info size: 2028kB, size after compression: 1968kB
/usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
mangling shebang in /usr/lib64/R/library/BiocParallel/RSOCKnode.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/R/library/BiocParallel/RMPInode.sh from /bin/sh to #!/usr/bin/sh
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.pLplTQ
Processing files: R-BiocParallel-1.16.5-3.fc31.riscv64
+ umask 022
+ cd /builddir/build/BUILD
+ cd BiocParallel
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Provides: R(BiocParallel) = 1.16.5 R-BiocParallel = 1.16.5-3.fc31 R-BiocParallel(riscv-64) = 1.16.5-3.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh R(futile.logger) R(methods) R(parallel) R(snow) R(stats) R(utils) R-core ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) rtld(GNU_HASH)
Suggests: R(BBmisc) R(BatchJobs) R(BiocGenerics) R(BiocStyle) R(GenomicAlignments) R(GenomicRanges) R(RNAseqData.HNRNPC.bam.chr14) R(RUnit) R(Rmpi) R(Rsamtools) R(ShortRead) R(TxDb.Hsapiens.UCSC.hg19.knownGene) R(VariantAnnotation) R(batchtools) R(codetools) R(data.table) R(doParallel) R(foreach) R(knitr) R(tools)
Processing files: R-BiocParallel-debugsource-1.16.5-3.fc31.riscv64
Provides: R-BiocParallel-debugsource = 1.16.5-3.fc31 R-BiocParallel-debugsource(riscv-64) = 1.16.5-3.fc31
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-BiocParallel-debuginfo-1.16.5-3.fc31.riscv64
Provides: R-BiocParallel-debuginfo = 1.16.5-3.fc31 R-BiocParallel-debuginfo(riscv-64) = 1.16.5-3.fc31 debuginfo(build-id) = 3296d413a70b6c6a441afcbd071ea8e81f69c177
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-BiocParallel-debugsource(riscv-64) = 1.16.5-3.fc31
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64
Wrote: /builddir/build/RPMS/R-BiocParallel-debugsource-1.16.5-3.fc31.riscv64.rpm
Wrote: /builddir/build/RPMS/R-BiocParallel-1.16.5-3.fc31.riscv64.rpm
Wrote: /builddir/build/RPMS/R-BiocParallel-debuginfo-1.16.5-3.fc31.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.kg3WkR
+ umask 022
+ cd /builddir/build/BUILD
+ cd BiocParallel
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-BiocParallel-1.16.5-3.fc31.riscv64
+ RPM_EC=0
BUILDSTDERR: ++ jobs -p
+ exit 0
Child return code was: 0