Mock Version: 2.15 Mock Version: 2.15 Mock Version: 2.15 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/lammps.spec'], chrootPath='/var/lib/mock/f37-build-657633-73269/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/lammps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1664236800 Wrote: /builddir/build/SRPMS/lammps-20220623-3.fc37.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/lammps.spec'], chrootPath='/var/lib/mock/f37-build-657633-73269/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/lammps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1664236800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dsXAl7 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf lammps-patch_23Jun2022 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/lammps-patch_23Jun2022.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd lammps-patch_23Jun2022 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (cf942e7d5f7af16b308a9e652cda8ccc78e2d19e.patch):' Patch #0 (cf942e7d5f7af16b308a9e652cda8ccc78e2d19e.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file unittest/fortran/CMakeLists.txt Patch #1 (a00201c899b054923ffe9c21874aa207bc791a1a.patch): + echo 'Patch #1 (a00201c899b054923ffe9c21874aa207bc791a1a.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file unittest/force-styles/tests/fix-timestep-addtorque_const.yaml patching file unittest/force-styles/tests/fix-timestep-spring_rg.yaml patching file unittest/force-styles/tests/fix-timestep-wall_harmonic_const.yaml + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6NWEtl + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd lammps-patch_23Jun2022 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/38513/exe ']' +++ /usr/bin/readlink /proc/38513/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + for mpi in '' mpich openmpi + test -n '' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -z '' ++ echo -DBUILD_MPI=OFF -DPKG_MPIIO=OFF -DBUILD_LAMMPS_SHELL=ON -DBUILD_TOOLS=ON + /usr/bin/cmake -S cmake -B serial -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -C cmake/presets/all_on.cmake -C cmake/presets/nolib.cmake -DBLA_VENDOR=FlexiBLAS -DCMAKE_TUNE_FLAGS= -DCMAKE_CUSTOM_LINKER=default -DPKG_PYTHON=ON -DPKG_VORONOI=ON -DPKG_ATC=ON -DPKG_H5MD=ON -DPKG_KOKKOS=ON -DEXTERNAL_KOKKOS=ON -DPKG_KIM=ON -DENABLE_TESTING=ON -DGTEST_URL=file:///builddir/build/SOURCES/googletest-8d51dc50eb7e7698427fed81b85edad0e032112e.tar.gz -DYAML_URL=file:///builddir/build/SOURCES/yaml-0.2.5.tar.gz -DOPENCL_LOADER_URL=file:///builddir/build/SOURCES/opencl-loader-2022.01.04.tar.gz -DPYTHON_INSTDIR=/usr/lib/python3.11/site-packages -DCMAKE_INSTALL_SYSCONFDIR=/etc -DPKG_GPU=ON -DGPU_API=OpenCL -DBUILD_OMP=ON -DFFT=FFTW3 -DPKG_INTEL=OFF -DCMAKE_INSTALL_BINDIR=/usr/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64 -DLAMMPS_MACHINE= -DLAMMPS_LIB_SUFFIX= -DCMAKE_INSTALL_MANDIR=/usr/share/man -DBUILD_MPI=OFF -DPKG_MPIIO=OFF -DBUILD_LAMMPS_SHELL=ON -DBUILD_TOOLS=ON loading initial cache file cmake/presets/all_on.cmake loading initial cache file cmake/presets/nolib.cmake -- The CXX compiler identification is GNU 12.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Running check for auto-generated files from make-based build system -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx', required by 'virtual:world', not found -- Looking for C++ include omp.h -- Looking for C++ include omp.h - found -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- The C compiler identification is GNU 12.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib64/libflexiblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib64/libflexiblas.so;/usr/lib64/libflexiblas.so -- Found JPEG: /usr/lib64/libjpeg.so (found version "62") -- Found PNG: /usr/lib64/libpng.so (found version "1.6.37") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.12") -- Found GZIP: /usr/bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib64/libfftw3.so -- Found Python: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter Development Development.Module Development.Embed -- Found VORO: /usr/lib64/libvoro++.so -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Enabled Kokkos devices: OPENMP;SERIAL -- Downloading and building OpenCL loader library -- Downloading file:///builddir/build/SOURCES/opencl-loader-2022.01.04.tar.gz -- [download 13% complete] -- [download 25% complete] -- [download 38% complete] -- [download 50% complete] -- [download 63% complete] -- [download 75% complete] -- [download 88% complete] -- [download 100% complete] -- Unpacking and configuring opencl-loader-2022.01.04.tar.gz -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for secure_getenv -- Looking for secure_getenv - found -- Looking for __secure_getenv -- Looking for __secure_getenv - not found -- Generating style headers... -- Generating package headers... -- Generating lmpinstalledpkgs.h... -- Looking for a Fortran compiler -- Looking for a Fortran compiler - /usr/bin/f95 -- The Fortran compiler identification is GNU 12.2.1 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/f95 - skipped -- Checking for module 'readline' -- Found readline, version 8.1 -- Found Python: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter -- Downloading and building googletest framework -- Downloading file:///builddir/build/SOURCES/googletest-8d51dc50eb7e7698427fed81b85edad0e032112e.tar.gz -- [download 2% complete] -- [download 4% complete] -- [download 6% complete] -- [download 8% complete] -- [download 10% complete] -- [download 11% complete] -- [download 13% complete] -- [download 15% complete] -- [download 17% complete] -- [download 19% complete] -- [download 21% complete] -- [download 23% complete] -- [download 25% complete] -- [download 27% complete] -- [download 29% complete] -- [download 31% complete] -- [download 33% complete] -- [download 34% complete] -- [download 36% complete] -- [download 38% complete] -- [download 40% complete] -- [download 42% complete] -- [download 44% complete] -- [download 46% complete] -- [download 48% complete] -- [download 50% complete] -- [download 52% complete] -- [download 54% complete] -- [download 55% complete] -- [download 57% complete] -- [download 59% complete] -- [download 61% complete] -- [download 63% complete] -- [download 65% complete] -- [download 67% complete] -- [download 69% complete] -- [download 71% complete] -- [download 73% complete] -- [download 75% complete] -- [download 77% complete] -- [download 78% complete] -- [download 80% complete] -- [download 82% complete] -- [download 84% complete] -- [download 86% complete] -- [download 88% complete] -- [download 90% complete] -- [download 92% complete] -- [download 94% complete] -- [download 96% complete] -- [download 98% complete] -- [download 100% complete] -- Unpacking and configuring googletest-8d51dc50eb7e7698427fed81b85edad0e032112e.tar.gz -- Skipping test on non-MPI compilation -- Skipping test on non-MPI compilation -- Found Python: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter Development Development.Module Development.Embed -- Found Python: /usr/bin/python3.11 (found suitable version "3.11.0", minimum required is "3.5") found components: Interpreter -- Could NOT find YAML (missing: YAML_LIBRARY YAML_INCLUDE_DIR) -- Downloading file:///builddir/build/SOURCES/yaml-0.2.5.tar.gz -- [download 3% complete] -- [download 5% complete] -- [download 8% complete] -- [download 11% complete] -- [download 13% complete] -- [download 16% complete] -- [download 19% complete] -- [download 22% complete] -- [download 24% complete] -- [download 27% complete] -- [download 30% complete] -- [download 32% complete] -- [download 35% complete] -- [download 38% complete] -- [download 40% complete] -- [download 43% complete] -- [download 46% complete] -- [download 48% complete] -- [download 51% complete] -- [download 54% complete] -- [download 56% complete] -- [download 59% complete] -- [download 62% complete] -- [download 65% complete] -- [download 67% complete] -- [download 70% complete] -- [download 73% complete] -- [download 75% complete] -- [download 78% complete] -- [download 81% complete] -- [download 83% complete] -- [download 86% complete] -- [download 89% complete] -- [download 91% complete] -- [download 94% complete] -- [download 97% complete] -- [download 99% complete] -- [download 100% complete] -- Unpacking and configuring yaml-0.2.5.tar.gz -- Found Python: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is at least version "8.0") -- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is at least version "8.0") -- The following tools and libraries have been found and configured: * OpenMP * LAPACK * BLAS * JPEG * PNG * ZLIB * FFTW3 * VORO * KIM-API (required version >= 2.2.0) * HDF5 * Kokkos (required version >= 3.6.00) * PkgConfig * Threads * Python -- <<< Build configuration >>> LAMMPS Version: 20220623 Operating System: Linux Fedora Linux 37 Build type: Install path: /usr Generator: Unix Makefiles using /usr/bin/gmake -- Enabled packages: ASPHERE;ATC;BOCS;BODY;BPM;BROWNIAN;CG-DNA;CG-SDK;CLASS2;COLLOID;COLVARS;CORESHELL;DIELECTRIC;DIFFRACTION;DIPOLE;DPD-BASIC;DPD-MESO;DPD-REACT;DPD-SMOOTH;DRUDE;EFF;EXTRA-COMPUTE;EXTRA-DUMP;EXTRA-FIX;EXTRA-MOLECULE;EXTRA-PAIR;FEP;GPU;GRANULAR;H5MD;INTERLAYER;KIM;KOKKOS;KSPACE;MANIFOLD;MANYBODY;MC;MEAM;MGPT;MISC;ML-IAP;ML-RANN;ML-SNAP;MOFFF;MOLECULE;OPENMP;OPT;ORIENT;PERI;PHONON;PLUGIN;POEMS;PTM;PYTHON;QEQ;QTB;REACTION;REAXFF;REPLICA;RIGID;SHOCK;SMTBQ;SPH;SPIN;SRD;TALLY;UEF;VORONOI;YAFF -- <<< Compilers and Flags: >>> -- C++ Compiler: /usr/bin/g++ Type: GNU Version: 12.2.1 C++ Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_EXCEPTIONS;LAMMPS_OMP_COMPAT=4;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LMP_PYTHON;LMP_OPENMP;$;LMP_GPU;LMP_PLUGIN -- Fortran Compiler: /usr/bin/f95 Type: GNU Version: 12.2.1 Fortran Flags:-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules -- C compiler: /usr/bin/gcc Type: GNU Version: 12.2.1 C Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -- <<< Linker flags: >>> -- Executable name: lmp -- Executable linker flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -- Shared library flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -- <<< GPU package settings >>> -- GPU API: OPENCL -- GPU precision: MIXED -- Kokkos Arch: -- <<< FFT settings >>> -- Primary FFT lib: FFTW3 -- Using double precision FFTs -- Using threaded FFTs -- Kokkos FFT: FFTW3 -- <<< Building Tools >>> -- <<< Building LAMMPS Shell >>> -- <<< Building Unit Tests >>> -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CUSTOM_LINKER CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LAMMPS_LIB_SUFFIX LIB_INSTALL_DIR LIB_SUFFIX PYTHON_INSTDIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/lammps-patch_23Jun2022/serial + /usr/bin/cmake --build serial -j1 --verbose /usr/bin/cmake -S/builddir/build/BUILD/lammps-patch_23Jun2022/cmake -B/builddir/build/BUILD/lammps-patch_23Jun2022/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles /builddir/build/BUILD/lammps-patch_23Jun2022/serial//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/build.make _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build/CMakeFiles/OpenCL.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/build.make _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 0%] Building C object _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd.c.o cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/gcc -DCL_TARGET_OPENCL_VERSION=300 -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=gnu99 -MD -MT _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd.c.o -MF CMakeFiles/OpenCL.dir/loader/icd.c.o.d -o CMakeFiles/OpenCL.dir/loader/icd.c.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader/icd.c [ 0%] Building C object _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd_dispatch.c.o cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/gcc -DCL_TARGET_OPENCL_VERSION=300 -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=gnu99 -MD -MT _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd_dispatch.c.o -MF CMakeFiles/OpenCL.dir/loader/icd_dispatch.c.o.d -o CMakeFiles/OpenCL.dir/loader/icd_dispatch.c.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader/icd_dispatch.c [ 0%] Building C object _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd_dispatch_generated.c.o cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/gcc -DCL_TARGET_OPENCL_VERSION=300 -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=gnu99 -MD -MT _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/icd_dispatch_generated.c.o -MF CMakeFiles/OpenCL.dir/loader/icd_dispatch_generated.c.o.d -o CMakeFiles/OpenCL.dir/loader/icd_dispatch_generated.c.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader/icd_dispatch_generated.c [ 0%] Building C object _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/linux/icd_linux.c.o cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/gcc -DCL_TARGET_OPENCL_VERSION=300 -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=gnu99 -MD -MT _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/linux/icd_linux.c.o -MF CMakeFiles/OpenCL.dir/loader/linux/icd_linux.c.o.d -o CMakeFiles/OpenCL.dir/loader/linux/icd_linux.c.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader/linux/icd_linux.c [ 0%] Building C object _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/linux/icd_linux_envvars.c.o cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/gcc -DCL_TARGET_OPENCL_VERSION=300 -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=gnu99 -MD -MT _deps/opencl_loader-build/CMakeFiles/OpenCL.dir/loader/linux/icd_linux_envvars.c.o -MF CMakeFiles/OpenCL.dir/loader/linux/icd_linux_envvars.c.o.d -o CMakeFiles/OpenCL.dir/loader/linux/icd_linux_envvars.c.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/loader/linux/icd_linux_envvars.c [ 0%] Linking C static library libOpenCL.a cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/cmake -P CMakeFiles/OpenCL.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-build && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenCL.dir/link.txt --verbose=1 /usr/bin/ar qc libOpenCL.a CMakeFiles/OpenCL.dir/loader/icd.c.o CMakeFiles/OpenCL.dir/loader/icd_dispatch.c.o CMakeFiles/OpenCL.dir/loader/icd_dispatch_generated.c.o CMakeFiles/OpenCL.dir/loader/linux/icd_linux.c.o CMakeFiles/OpenCL.dir/loader/linux/icd_linux_envvars.c.o /usr/bin/ranlib libOpenCL.a gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 0%] Built target OpenCL /usr/bin/gmake -f CMakeFiles/lepton.dir/build.make CMakeFiles/lepton.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lepton.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lepton.dir/build.make CMakeFiles/lepton.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'void Lepton::CompiledExpression::compileExpression(const Lepton::ExpressionTreeNode&, std::vector >&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp:91:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 91 | for (int i = 0; i < node.getChildren().size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp:113:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 113 | for (int i = 1; i < args.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'double Lepton::CompiledExpression::evaluate() const': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp:168:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 168 | for (int i = 0; i < variablesToCopy.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp:173:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 173 | for (int step = 0; step < operation.size(); step++) { | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp:178:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 178 | for (int i = 0; i < args.size(); i++) | ~~^~~~~~~~~~~~~ [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:32: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include/lepton/CompiledVectorExpression.h: In constructor 'Lepton::CompiledVectorExpression::CompiledVectorExpression(const Lepton::ParsedExpression&, int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include/lepton/CompiledVectorExpression.h:127:12: warning: 'Lepton::CompiledVectorExpression::jitCode' will be initialized after [-Wreorder] 127 | void (*jitCode)(); | ^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include/lepton/CompiledVectorExpression.h:116:9: warning: 'int Lepton::CompiledVectorExpression::width' [-Wreorder] 116 | int width; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:47:1: warning: when initialized here [-Wreorder] 47 | CompiledVectorExpression::CompiledVectorExpression(const ParsedExpression& expression, int width) : jitCode(NULL), width(width) { | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp: In member function 'void Lepton::CompiledVectorExpression::compileExpression(const Lepton::ExpressionTreeNode&, std::vector >&, int&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:111:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 111 | for (int i = 0; i < node.getChildren().size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:133:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 133 | for (int i = 1; i < args.size(); i++) | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp: In member function 'const float* Lepton::CompiledVectorExpression::evaluate() const': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:194:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 194 | for (int i = 0; i < variablesToCopy.size(); i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:200:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 200 | for (int step = 0; step < operation.size(); step++) { | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp:210:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 210 | for (int i = 0; i < args.size(); i++) | ~~^~~~~~~~~~~~~ [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const std::vector&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:41:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 41 | if (operation->getNumArguments() != children.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&, const Lepton::ExpressionTreeNode&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:48:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 48 | if (operation->getNumArguments() != children.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:54:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 54 | if (operation->getNumArguments() != children.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:59:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 59 | if (operation->getNumArguments() != children.size()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In member function 'void Lepton::ExpressionTreeNode::assignTags(std::vector&) const': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:133:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 133 | if (numTags == examples.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:136:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 136 | for (int i = 0; i < examples.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp:139:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 139 | for (int j = 0; matches && j < getChildren().size(); j++) | ~~^~~~~~~~~~~~~~~~~~~~~~ [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp: In function 'Lepton::ParsedExpression::substituteSimplerExpression(Lepton::ExpressionTreeNode const&, std::map, std::allocator > >&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp:217:174: warning: 'first' may be used uninitialized [-Wmaybe-uninitialized] 217 | return ExpressionTreeNode(new Operation::MultiplyConstant(first*dynamic_cast(&children[1].getOperation())->getValue()), children[1].getChildren()[0]); | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp:159:12: note: 'first' was declared here 159 | double first, second; // if yes, value of first and second child | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp:222:175: warning: 'second' may be used uninitialized [-Wmaybe-uninitialized] 222 | return ExpressionTreeNode(new Operation::MultiplyConstant(second*dynamic_cast(&children[0].getOperation())->getValue()), children[0].getChildren()[0]); | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp:159:19: note: 'second' was declared here 159 | double first, second; // if yes, value of first and second child | ^~~~~~ [ 0%] Building CXX object CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp.o /usr/bin/g++ -DLEPTON_BUILDING_STATIC_LIBRARY -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp.o -MF CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp.o.d -o CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ParsedExpression Lepton::Parser::parse(const std::string&, const std::map, Lepton::CustomFunction*>&)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp:181:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | if (pos != tokens.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp:190:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 190 | if (pos != tokens.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ExpressionTreeNode Lepton::Parser::parsePrecedence(const std::vector&, int&, const std::map, Lepton::CustomFunction*>&, const std::map, Lepton::ExpressionTreeNode>&, int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp:201:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 201 | if (pos == tokens.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp:227:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 227 | if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp:241:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 241 | if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen) | ~~~~^~~~~~~~~~~~~~~~ [ 0%] Linking CXX static library liblammps_lepton.a /usr/bin/cmake -P CMakeFiles/lepton.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/lepton.dir/link.txt --verbose=1 /usr/bin/ar qc liblammps_lepton.a "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledExpression.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/CompiledVectorExpression.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionProgram.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Operation.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/ParsedExpression.cpp.o" "CMakeFiles/lepton.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/src/Parser.cpp.o" /usr/bin/ranlib liblammps_lepton.a gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 0%] Built target lepton /usr/bin/gmake -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/colvars.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp [ 0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp [ 0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp [ 0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp [ 0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp [ 1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp [ 2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp.o /usr/bin/g++ -DCOLVARS_LAMMPS -DLEPTON -DLEPTON_USE_STATIC_LIBRARIES -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp [ 2%] Linking CXX static library liblammps_colvars.a /usr/bin/cmake -P CMakeFiles/colvars.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/colvars.dir/link.txt --verbose=1 /usr/bin/ar qc liblammps_colvars.a "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvar_neuralnetworkcompute.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvaratoms.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_abf.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_alb.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_histogram_reweight_amd.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_meta.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarbias_restraint.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_alchlambda.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_angles.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_apath.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_combination.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_coordnums.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_distances.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_gpath.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_neuralnetwork.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_protein.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_rotations.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarcomp_volmaps.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvardeps.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvargrid.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarmodule.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparams.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarparse.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_replicas.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_tcl.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarproxy_volmaps.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_bias.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarscript_commands_colvar.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvartypes.cpp.o" "CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/colvarvalue.cpp.o" /usr/bin/ranlib liblammps_colvars.a gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 2%] Built target colvars /usr/bin/gmake -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/poems.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp [ 2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp:18: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.h: In constructor 'TreeNode::TreeNode(const int&, TreeNode*, TreeNode*, int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.h:36:13: warning: 'TreeNode::data' will be initialized after [-Wreorder] 36 | int data; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.h:32:19: warning: 'TreeNode* TreeNode::left' [-Wreorder] 32 | TreeNode *left; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp:22:1: warning: when initialized here [-Wreorder] 22 | TreeNode::TreeNode (const int & item, TreeNode *lptr,TreeNode *rptr, | ^~~~~~~~ [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp [ 3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp [ 4%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp [ 4%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp [ 4%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp [ 4%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp [ 4%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp.o -MF CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp.o.d -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp [ 4%] Linking CXX static library liblammps_poems.a /usr/bin/cmake -P CMakeFiles/poems.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1 /usr/bin/ar qc liblammps_poems.a "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/body23joint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatmap.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/colmatrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/eulerparameters.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fastmatrixops.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/fixedpoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/freebodyjoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/inertialframe.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/joint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat3x3.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat4x4.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mat6x6.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/matrixfun.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/mixedjoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/norm.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onbody.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onfunctions.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/onsolver.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/particle.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemsobject.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/poemstreenode.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/point.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/prismaticjoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/revolutejoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rigidbody.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/rowmatrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/solver.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/sphericaljoint.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/system.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect3.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect4.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/vect6.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualcolmatrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualmatrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/virtualrowmatrix.cpp.o" "CMakeFiles/poems.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems/workspace.cpp.o" /usr/bin/ranlib liblammps_poems.a gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 4%] Built target poems /usr/bin/gmake -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/atc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingEnergy.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMass.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Coupling.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferKernel.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.h:9, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomToMoleculeTransfer.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/BodyForce.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/BodyForce.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/BodyForce.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/BodyForce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/BodyForce.cpp [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CBLattice.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CauchyBorn.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CbPotential.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CbPotential.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CbPotential.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomicRegulator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ChargeRegulator.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomicRegulator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ConcentrationRegulator.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronChargeDensity.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronChargeDensity.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronChargeDensity.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronChargeDensity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronChargeDensity.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronDragPower.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronDragPower.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronDragPower.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronDragPower.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronDragPower.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronFlux.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatCapacity.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatCapacity.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatCapacity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatCapacity.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatFlux.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatFlux.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatFlux.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronHeatFlux.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronPhononExchange.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronPhononExchange.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronPhononExchange.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ElectronPhononExchange.cpp [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModel.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.cpp:3: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.h:9, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Engine.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Interpolate.cpp:3: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp In file included from /usr/include/c++/12/cassert:44, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp:9: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp: In member function 'virtual void ATC::FE_3DMesh::partition_mesh()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp:2124:32: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 2124 | assert(procEltLists.size() >= nProcs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Element.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FE_Mesh.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldEulerIntegrator.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FieldManager.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Function.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Function.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Function.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Function.cpp [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FundamentalAtomicQuantity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/FundamentalAtomicQuantity.cpp [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/GhostManager.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/InterscaleOperators.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/12/bits/stl_tree.h:63, from /usr/include/c++/12/set:60, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:4: In function 'std::max(double const&, double const&)double const&', inlined from 'ATC::KinetoThermostatRescale::apply_post_corrector(double)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp:353:158: /usr/include/c++/12/bits/stl_algobase.h:259:7: warning: 'pErr' may be used uninitialized [-Wmaybe-uninitialized] 259 | if (__a < __b) | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp: In member function 'ATC::KinetoThermostatRescale::apply_post_corrector(double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp:330:18: note: 'pErr' was declared here 330 | double eErr, pErr; | ^~~~ In function 'std::max(double const&, double const&)double const&', inlined from 'ATC::KinetoThermostatRescale::apply_post_corrector(double)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp:353:158: /usr/include/c++/12/bits/stl_algobase.h:259:7: warning: 'eErr' may be used uninitialized [-Wmaybe-uninitialized] 259 | if (__a < __b) | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp: In member function 'ATC::KinetoThermostatRescale::apply_post_corrector(double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/KinetoThermostat.cpp:330:12: note: 'eErr' was declared here 330 | double eErr, pErr; | ^~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomicRegulator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Kinetostat.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const std::string&)' defined but not used [-Wunused-function] 303 | static std::string to_cap(const std::string &s) { | ^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp: In function 'MPI_Wrappers::rank_min(int, double*, double*, int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp:111:19: warning: pointer used after 'operator delete[](void*)' [-Wuse-after-free] 111 | return out[0].rank; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MPI_Wrappers.cpp:110:14: note: call to 'operator delete[](void*)' here 110 | delete[] out; | ^~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Material.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixDef.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:3, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const std::string&)' defined but not used [-Wunused-function] 303 | static std::string to_cap(const std::string &s) { | ^~~~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MeshReader.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MeshReader.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MeshReader.cpp [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MoleculeSet.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/OutputManager.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/OutputManager.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/OutputManager.cpp [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PaqAtcUtility.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In member function 'ATC_matrix::DenseMatrix::set_all_elements_to(int const&)', inlined from 'ATC_matrix::Matrix::zero()' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:723:22, inlined from 'ATC_matrix::DenseMatrix::_create(int, int, bool)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:277:23, inlined from 'ATC_matrix::DenseMatrix::DenseMatrix(int, int, bool)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:19:77, inlined from 'ATC::MatrixDependencyManager::MatrixDependencyManager()' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:124:31, inlined from 'ATC::PerAtomQuantity::PerAtomQuantity(ATC::ATC_Method*, int, ATC::AtomType)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity-inl.h:28:26: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:239:43: warning: array subscript 0 is outside array bounds of 'int[0:]' [-Warray-bounds] 239 | for (INDEX i = 0; i < sz; i++) _data[i] = v; | ~~~~~~~~~^~~ In member function 'ATC_matrix::DenseMatrix::_create(int, int, bool)', inlined from 'ATC_matrix::DenseMatrix::DenseMatrix(int, int, bool)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:19:77, inlined from 'ATC::MatrixDependencyManager::MatrixDependencyManager()' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:124:31, inlined from 'ATC::PerAtomQuantity::PerAtomQuantity(ATC::ATC_Method*, int, ATC::AtomType)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity-inl.h:28:26: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:276:27: note: object of size 0 allocated by 'operator new[](unsigned long)' 276 | _data = (this->size() ? new T [_nCols*_nRows] : nullptr); | ^~~~~~~~~~~~~~~~~~~~~ In member function 'ATC_matrix::DenseMatrix::set_all_elements_to(int const&)', inlined from 'ATC_matrix::Matrix::zero()' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:723:22, inlined from 'ATC_matrix::DenseMatrix::_create(int, int, bool)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:277:23, inlined from 'ATC_matrix::DenseMatrix::DenseMatrix(int, int, bool)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:19:77, inlined from 'ATC::MatrixDependencyManager::MatrixDependencyManager()' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:124:31, inlined from 'ATC::PerAtomQuantity::PerAtomQuantity(ATC::ATC_Method*, int, ATC::AtomType)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity-inl.h:28:26: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:239:43: warning: 'memset' offset [0, 3] is out of the bounds [0, 0] [-Warray-bounds] 239 | for (INDEX i = 0; i < sz; i++) _data[i] = v; | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerPairQuantity.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PhysicsModel.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PoissonSolver.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PolynomialSolver.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PolynomialSolver.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PolynomialSolver.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PolynomialSolver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PolynomialSolver.cpp [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PrescribedDataManager.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PrescribedDataManager.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PrescribedDataManager.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PrescribedDataManager.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PrescribedDataManager.cpp [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Quadrature.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Quadrature.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Quadrature.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Quadrature.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Quadrature.cpp [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LinearSolver.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SchrodingerSolver.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeIntegrator.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.h:9, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SpeciesTimeIntegrator.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeIntegrator.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ThermalTimeIntegrator.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/AtomicRegulator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Thermostat.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TimeFilter.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/LammpsInterface.h:25, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantity.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/PerAtomQuantityLibrary.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/TransferOperator.cpp:2: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix.h:297, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:10: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h: In member function 'ATC_matrix::SparseMatrix::compress()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:341:12: warning: 'next.v' may be used uninitialized [-Wmaybe-uninitialized] 341 | val[i] = next.v; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/SparseMatrix-inl.h:304:43: note: 'next.v' was declared here 304 | TRI_COORD nextCRS, nextTRI(_tri[0]), next; | ^~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixDef.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:3, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseVector.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Vector.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const std::string&)' defined but not used [-Wunused-function] 303 | static std::string to_cap(const std::string &s) { | ^~~~~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:7, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.h:8, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ViscousStress.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h: In member function 'ATC_matrix::CloneVector::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationChargeDiffusion.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationElectronTemperature.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationElectronTemperature.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationElectronTemperature.cpp [ 8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationMassDiffusion.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::operator[](int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp.o /usr/bin/g++ -DLAMMPS_SMALLBIG -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DenseMatrix.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/MatrixLibrary.h:4, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_TypeDefs.h:17, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Method.h:5, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/ATC_Transfer.h:6, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/WeakEquationPhononTemperature.cpp:1: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(const ATC_matrix::Matrix&) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:93: required from 'void ATC::MatrixDependencyManager::operator*=(const ATC::MatrixDependencyManager&) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:182:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:529:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 529 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:538:24: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 538 | (*this)(i,j) *= R[i]; | ~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:546:20: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 546 | (*this)[i] *= R[i]; | ~~~~~~~~~~~^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h: In instantiation of 'ATC_matrix::Matrix& ATC_matrix::Matrix::operator*=(T) [with T = bool]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:58: required from 'void ATC::MatrixDependencyManager::operator*=(U) [with T = ATC_matrix::DenseMatrix; U = bool]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/DependencyManager.h:167:18: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc/Matrix.h:612:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 612 | int sz=this->size(); for(INDEX i=0; i::compile_kernels(ucl_opencl::UCL_Device&, const void*, const char*, int) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.cpp:351:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.cpp:343:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 343 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp:17: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp: In instantiation of 'void LAMMPS_AL::BaseCharge::compile_kernels(ucl_opencl::UCL_Device&, const void*, const char*, int) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp:370:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp:362:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 362 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp:17: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp: In instantiation of 'void LAMMPS_AL::BaseDipole::compile_kernels(ucl_opencl::UCL_Device&, const void*, const char*) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp:372:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp:364:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 364 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp:17: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp: In instantiation of 'void LAMMPS_AL::BaseDPD::compile_kernels(ucl_opencl::UCL_Device&, const void*, const char*, int) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp:372:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp:364:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 364 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp:16: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp: In instantiation of 'void LAMMPS_AL::BaseEllipsoid::compile_kernels(ucl_opencl::UCL_Device&, const void*, const void*, const char*, bool) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp:580:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp:572:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 572 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp:16: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp: In instantiation of 'void LAMMPS_AL::BaseThree::compile_kernels(ucl_opencl::UCL_Device&, const void*, const char*, const char*, const char*, const char*, int, int, int) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp:482:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp:474:27: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 474 | if (_threads_per_atom > mx_subgroup_sz) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Beck::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp:88:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Beck::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Born::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp:92:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Born::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Buck::init(int, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp:87:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Buck::init(int, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::CHARMM::init(int, double, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double, double, double*, double, double, double, double, double, double**, double**, bool)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp:77:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 77 | UCL_H_Vec host_write(h_size*32,*(this->ucl_device), | ^~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::CHARMMLong::init(int, double, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double, double, double*, double, double, double, double, double**, double**, bool)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp:79:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 79 | UCL_H_Vec host_write(h_size*32,*(this->ucl_device), | ^~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Colloid::init(int, double**, double**, double**, double**, double**, double**, double*, double**, double**, double**, double**, double**, double**, double**, int**, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp:111:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Colloid::init(int, double**, double**, double**, double**, double**, double**, double*, double**, double**, double**, double**, double**, double**, double**, int**, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp: In member function 'LAMMPS_AL::CoulDSF::init(int, int, int, int, int, double, double, _IO_FILE*, double, double*, double, double, double, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp:83:18: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 83 | host_write[i]=host_special_coul[i]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp:75:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 75 | UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), | ^~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp: In member function 'LAMMPS_AL::CoulLongCS::init(int, double**, int, int, int, int, double, double, _IO_FILE*, double, double*, double, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp:65:18: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 65 | host_write[i]=host_special_coul[i]; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp:54:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 54 | UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), | ^~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp:16: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp: In instantiation of 'int LAMMPS_AL::Device::init_device(int, int, int, int, int, double, int, double, char*, int, char*, int) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp:1036:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp:89:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 89 | for (int i=0; i::size_type' {aka 'long unsigned int'} [-Wsign-compare] 306 | for (int i=0; i::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::DPD::init(int, double**, double**, double**, double**, double**, double*, bool, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd.cpp:105:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::DPD::init(int, double**, double**, double**, double**, double**, double*, bool, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Gauss::init(int, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp:83:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Gauss::init(int, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp:27: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJ::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp:103:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJ::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJ96::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp:88:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJ96::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::LJClass2Long::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double, double*, double, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp:75:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 75 | UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), | ^~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJCubic::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp:92:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJCubic::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::LJDSF::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double, double*, double, double, double, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp:79:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 79 | UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), | ^~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJExpand::init(int, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp:88:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJExpand::init(int, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJGROMACS::init(int, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double**, double**, double**, double**, double**, double**)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp:94:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJGROMACS::init(int, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double**, double**, double**, double**, double**, double**)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::CGCMM::init(int, double**, int**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp:88:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::CGCMM::init(int, double**, int**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::CGCMMLong::init(int, double**, int**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double, double*, double, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(float * *)&host_write + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp:76:21: note: 'MEM[(float * *)&host_write + 24B]' was declared here 76 | UCL_H_Vec host_write(lj_types*lj_types*32,*(this->ucl_device), | ^~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.h:16, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp:21: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::LJSMOOTH::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double**, double**, double**, double**, double**, double**)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp:110:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::LJSMOOTH::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double**, double**, double**, double**, double**, double**, double**)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.h:16, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:40, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h: In instantiation of 'int ucl_opencl::UCL_D_Vec::resize_ib(int) [with numtyp = int]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:251:20: required from 'void LAMMPS_AL::LJ_TIP4PLong::copy_relations_data(int, tagint*, int*, int, int*, int, int) [with numtyp = float; acctyp = double; tagint = int]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:401:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h:378:15: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 378 | { if (cols>_cols) return resize(cols); else return UCL_SUCCESS; } | ~~~~^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h: In instantiation of 'int ucl_opencl::UCL_D_Vec::resize_ib(int) [with numtyp = _lgpu_float4]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:253:14: required from 'void LAMMPS_AL::LJ_TIP4PLong::copy_relations_data(int, tagint*, int*, int, int*, int, int) [with numtyp = float; acctyp = double; tagint = int]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:401:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h:378:15: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h: In instantiation of 'int ucl_opencl::UCL_D_Vec::resize_ib(int) [with numtyp = _lgpu_double4]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:205:31: required from 'int LAMMPS_AL::LJ_TIP4PLong::loop(int, int) [with numtyp = float; acctyp = double]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp:401:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_d_vec.h:378:15: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Mie::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp:88:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Mie::init(int, double**, double**, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Morse::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp:87:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Morse::init(int, double**, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:19: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp: In instantiation of 'void LAMMPS_AL::Neighbor::build_nbor_list(double**, int, int, int, LAMMPS_AL::Atom&, double*, double*, tagint*, int**, tagint**, bool&, int&, ucl_opencl::UCL_Vector&) [with numtyp = float; acctyp = double; tagint = int]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:838:38: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:635:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 635 | if (subgroup_count > subgroup2cell.numel()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:705:28: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 705 | if (bin_stencil_size > _host_bin_stencil.numel()) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.h:22: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_texture.h: In instantiation of 'void ucl_opencl::UCL_Const::update_device(ucl_opencl::UCL_H_Vec&, int) [with numtyp = int]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:712:33: required from 'void LAMMPS_AL::Neighbor::build_nbor_list(double**, int, int, int, LAMMPS_AL::Atom&, double*, double*, tagint*, int**, tagint**, bool&, int&, ucl_opencl::UCL_Vector&) [with numtyp = float; acctyp = double; tagint = int]' /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp:838:38: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_texture.h:80:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'const int' [-Wsign-compare] 80 | if (_global_bytes < bytes) { | ~~~~~~~~~~~~~~^~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_kernel.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp:18: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp: In member function 'LAMMPS_AL::NeighborShared::best_cell_size(double, double, double, int, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp:86:50: warning: 'best_size' may be used uninitialized [-Wmaybe-uninitialized] 86 | const int cells_in_cutoff=static_cast(ceil(cut/best_size)); | ~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp:70:10: note: 'best_size' was declared here 70 | double best_size; | ^~~~~~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp:25: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp:27: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Soft::init(int, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp:82:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Soft::init(int, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Table::init(int, double**, double***, double**, double*, int, int, int, int, double, double, _IO_FILE*, int, int, int)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp:214:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Table::init(int, double**, double***, double**, double*, int, int, int, int, double, double, _IO_FILE*, int, int, int)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp: In instantiation of 'int LAMMPS_AL::Tersoff::loop(int, int, int, bool&) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp:350:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp:263:36: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 263 | if (nall*this->nbor->max_nbors() > _zetaij.cols()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::Tersoff::init(int, int, int, int, double, double, _IO_FILE*, int*, int, int***, int, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_map + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp:208:18: note: 'MEM[(int * *)&dview_map + 24B]' was declared here 208 | UCL_H_Vec dview_map(ntypes, *(this->ucl_device), UCL_WRITE_ONLY); | ^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_elem2param + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp:193:18: note: 'MEM[(int * *)&dview_elem2param + 24B]' was declared here 193 | UCL_H_Vec dview_elem2param(nelements*nelements*nelements, | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp: In instantiation of 'int LAMMPS_AL::TersoffMod::loop(int, int, int, bool&) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp:337:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp:255:36: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 255 | if (nall*this->nbor->max_nbors() > _zetaij.cols()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::TersoffMod::init(int, int, int, int, double, double, _IO_FILE*, int*, int, int***, int, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_map + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp:202:18: note: 'MEM[(int * *)&dview_map + 24B]' was declared here 202 | UCL_H_Vec dview_map(ntypes, *(this->ucl_device), UCL_WRITE_ONLY); | ^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_elem2param + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp:187:18: note: 'MEM[(int * *)&dview_elem2param + 24B]' was declared here 187 | UCL_H_Vec dview_elem2param(nelements*nelements*nelements, | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp: In instantiation of 'int LAMMPS_AL::TersoffZBL::loop(int, int, int, bool&) [with numtyp = float; acctyp = double]': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp:362:16: required from here /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp:279:36: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 279 | if (nall*this->nbor->max_nbors() > _zetaij.cols()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::TersoffZBL::init(int, int, int, int, double, double, _IO_FILE*, int*, int, int***, int, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double, double, double, double const*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_map + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp:220:18: note: 'MEM[(int * *)&dview_map + 24B]' was declared here 220 | UCL_H_Vec dview_map(ntypes, *(this->ucl_device), UCL_WRITE_ONLY); | ^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_elem2param + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp:205:18: note: 'MEM[(int * *)&dview_elem2param + 24B]' was declared here 205 | UCL_H_Vec dview_elem2param(nelements*nelements*nelements, | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp:26: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::UFM::init(int, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp:90:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::UFM::init(int, double**, double**, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp:22: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:29, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h: In member function 'LAMMPS_AL::Vashishta::init(int, int, int, int, double, double, _IO_FILE*, int*, int, int***, int, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*, double const*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_map + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp:173:18: note: 'MEM[(int * *)&dview_map + 24B]' was declared here 173 | UCL_H_Vec dview_map(lj_types, *(this->ucl_device), UCL_WRITE_ONLY); | ^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_memory.h:645:38: warning: 'MEM[(int * *)&dview_elem2param + 24B]' may be used uninitialized [-Wmaybe-uninitialized] 645 | CL_SAFE_CALL(clEnqueueWriteBuffer(cq,dst.cbegin(),block,dst_offset,n, | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp:158:18: note: 'MEM[(int * *)&dview_elem2param + 24B]' was declared here 158 | UCL_H_Vec dview_elem2param(nelements*nelements*nelements, | ^~~~~~~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::Yukawa::init(int, double**, double, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp:83:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::Yukawa::init(int, double**, double, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:38, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:24: In member function 'ucl_opencl::UCL_H_Vec::operator[](int)', inlined from 'ucl_opencl::_ucl_cast_copy<0, 1>::cc, ucl_opencl::UCL_H_Vec, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, ucl_opencl::UCL_H_Vec&)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:323:18, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, unsigned long, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:647:56, inlined from 'ucl_opencl::ucl_copy, ucl_opencl::UCL_H_Vec >(ucl_opencl::UCL_D_Vec&, ucl_opencl::UCL_H_Vec const&, bool)void' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:936:13, inlined from 'LAMMPS_AL::YukawaColloid::init(int, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double)' at /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp:101:11: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_h_vec.h:378:52: warning: 'cast_buffer._array' may be used uninitialized [-Wmaybe-uninitialized] 378 | inline numtyp & operator[](const int i) { return _array[i]; } | ^~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_mat.h:50: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h: In member function 'LAMMPS_AL::YukawaColloid::init(int, double**, double**, double**, double*, int, int, int, int, double, double, _IO_FILE*, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ucl_copy.h:645:43: note: 'cast_buffer' declared here 645 | UCL_H_Vec cast_buffer; | ^~~~~~~~~~~ [ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 17%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 17%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp:24: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 17%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp.o /usr/bin/g++ -DGERYON_NUMA_FISSION -DLAMMPS_SMALLBIG -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/gpu -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -isystem /builddir/build/BUILD/lammps-patch_23Jun2022/serial/_deps/opencl_loader-src/inc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -std=c++14 -MD -MT CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp.o -MF CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp.o.d -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_timer.h:28, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.h:23, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.h:19, from /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp:20: /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()': /builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/geryon/ocl_device.h:505:25: warning: variable 'props' set but not used [-Wunused-but-set-variable] 505 | cl_context_properties props[3]; | ^~~~~ [ 17%] Linking CXX static library liblammps_gpu.a /usr/bin/cmake -P CMakeFiles/gpu.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu.dir/link.txt --verbose=1 /usr/bin/ar qc liblammps_gpu.a "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_answer.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_atom.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_atomic.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_charge.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dipole.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_dpd.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_ellipsoid.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_base_three.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_beck_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_cs_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_coul_wolf_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_born_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_coul_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_buck_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_charmm_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_colloid_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_debye_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_dsf_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_cs_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_coul_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_device.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_lj.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_lj_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_lj_sf.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_lj_sf_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_long_lj.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dipole_long_lj_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_dpd_tstat_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_alloy_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_eam_fs_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gauss_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_gayberne_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj96_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_class2_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_debye_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_coul_msm_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_cubic_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_dsf_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_expand_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_gromacs_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_sdk_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_smooth_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_lj_tip4p_long_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_mie_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_morse_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_neighbor_shared.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_pppm_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_re_squared_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_soft_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_sw_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_table_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_mod_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_tersoff_zbl_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_ufm_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_vashishta_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_colloid_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_yukawa_ext.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl.cpp.o" "CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-patch_23Jun2022/lib/gpu/lal_zbl_ext.cpp.o" /usr/bin/ranlib liblammps_gpu.a gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target gpu /usr/bin/gmake -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/gitversion.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/cmake -DLAMMPS_DIR="/builddir/build/BUILD/lammps-patch_23Jun2022" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles" -P /builddir/build/BUILD/lammps-patch_23Jun2022/cmake/Modules/generate_lmpgitversion.cmake -- Git Directory: /builddir/build/BUILD/lammps-patch_23Jun2022/.git -- Generating lmpgitversion.h... gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target gitversion /usr/bin/gmake -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/angle.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/angle.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/angle.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target angle.h /usr/bin/gmake -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/atom.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/atom.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/atom.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target atom.h /usr/bin/gmake -f CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/bond.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/bond.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/bond.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target bond.h /usr/bin/gmake -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/citeme.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/citeme.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/citeme.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target citeme.h /usr/bin/gmake -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/comm.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/comm.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/comm.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target comm.h /usr/bin/gmake -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/compute.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/compute.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/compute.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target compute.h /usr/bin/gmake -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/dihedral.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/dihedral.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/dihedral.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target dihedral.h /usr/bin/gmake -f CMakeFiles/domain.h.dir/build.make CMakeFiles/domain.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/domain.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/domain.h.dir/build.make CMakeFiles/domain.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/domain.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/domain.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target domain.h /usr/bin/gmake -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/error.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Generating includes/lammps/error.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/error.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/error.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 17%] Built target error.h /usr/bin/gmake -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/fix.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/fix.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/fix.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target fix.h /usr/bin/gmake -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/force.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/force.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/force.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/force.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target force.h /usr/bin/gmake -f CMakeFiles/group.h.dir/build.make CMakeFiles/group.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/group.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/group.h.dir/build.make CMakeFiles/group.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/group.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/group.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/group.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target group.h /usr/bin/gmake -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/improper.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/improper.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/improper.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/improper.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target improper.h /usr/bin/gmake -f CMakeFiles/input.h.dir/build.make CMakeFiles/input.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/input.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/input.h.dir/build.make CMakeFiles/input.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/input.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/input.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/input.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target input.h /usr/bin/gmake -f CMakeFiles/info.h.dir/build.make CMakeFiles/info.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/info.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/info.h.dir/build.make CMakeFiles/info.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/info.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/info.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/info.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target info.h /usr/bin/gmake -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/kspace.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/kspace.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/kspace.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/kspace.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target kspace.h /usr/bin/gmake -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lammps.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/lammps.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/lammps.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/lammps.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target lammps.h /usr/bin/gmake -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lattice.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/lattice.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/lattice.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/lattice.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target lattice.h /usr/bin/gmake -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/library.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/library.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/library.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/library.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target library.h /usr/bin/gmake -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lmppython.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/lmppython.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/lmppython.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/lmppython.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target lmppython.h /usr/bin/gmake -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lmptype.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lmptype.h.dir/build.make CMakeFiles/lmptype.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/lmptype.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/lmptype.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/lmptype.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target lmptype.h /usr/bin/gmake -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/memory.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/memory.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/memory.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/memory.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target memory.h /usr/bin/gmake -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/modify.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/modify.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/modify.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/modify.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target modify.h /usr/bin/gmake -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/neighbor.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/neighbor.h.dir/build.make CMakeFiles/neighbor.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/neighbor.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/neighbor.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/neighbor.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target neighbor.h /usr/bin/gmake -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/neigh_list.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/neigh_list.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/neigh_list.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/neigh_list.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target neigh_list.h /usr/bin/gmake -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/output.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/output.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/output.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/output.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target output.h /usr/bin/gmake -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/pair.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/pair.h.dir/build.make CMakeFiles/pair.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/pair.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/pair.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/pair.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target pair.h /usr/bin/gmake -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/pointers.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/pointers.h.dir/build.make CMakeFiles/pointers.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/pointers.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/pointers.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/pointers.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target pointers.h /usr/bin/gmake -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/region.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/region.h.dir/build.make CMakeFiles/region.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/region.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/region.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/region.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target region.h /usr/bin/gmake -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/timer.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/timer.h.dir/build.make CMakeFiles/timer.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/timer.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/timer.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/timer.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target timer.h /usr/bin/gmake -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/universe.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/universe.h.dir/build.make CMakeFiles/universe.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/universe.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/universe.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/universe.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target universe.h /usr/bin/gmake -f CMakeFiles/update.h.dir/build.make CMakeFiles/update.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/update.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/update.h.dir/build.make CMakeFiles/update.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/update.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/update.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/update.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target update.h /usr/bin/gmake -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/utils.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/utils.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/utils.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/utils.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target utils.h /usr/bin/gmake -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/variable.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/variable.h.dir/build.make CMakeFiles/variable.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/variable.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/variable.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/variable.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target variable.h /usr/bin/gmake -f CMakeFiles/exceptions.h.dir/build.make CMakeFiles/exceptions.h.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/exceptions.h.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/exceptions.h.dir/build.make CMakeFiles/exceptions.h.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Generating includes/lammps/exceptions.h /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/lammps-patch_23Jun2022/src/exceptions.h /builddir/build/BUILD/lammps-patch_23Jun2022/serial/includes/lammps/exceptions.h gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Built target exceptions.h /usr/bin/gmake -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' cd /builddir/build/BUILD/lammps-patch_23Jun2022/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/cmake /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial /builddir/build/BUILD/lammps-patch_23Jun2022/serial/CMakeFiles/lammps.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' /usr/bin/gmake -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/lammps-patch_23Jun2022/serial' [ 18%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/angle.cpp [ 18%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_deprecated.cpp [ 18%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_hybrid.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_hybrid.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_hybrid.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_hybrid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_hybrid.cpp [ 18%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_zero.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_zero.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_zero.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_zero.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/angle_zero.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/arg_info.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/arg_info.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/arg_info.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/arg_info.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/arg_info.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/atom_vec_kokkos.h:20, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/atom_vec_angle_kokkos.h:26, from /builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles/style_atom.h:2, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp:17: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp: In member function 'LAMMPS_NS::Atom::data_atoms(int, char*, int, int, int, int, double*)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom.cpp:1010:12: warning: 'iptr' may be used uninitialized [-Wmaybe-uninitialized] 1010 | int xptr,iptr; | ^~~~ [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_map.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_map.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_map.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_map.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_map.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_atomic.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_atomic.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_atomic.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_atomic.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_atomic.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_body.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_body.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_body.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_body.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_body.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_charge.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_charge.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_charge.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_charge.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_charge.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_ellipsoid.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_ellipsoid.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_ellipsoid.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_ellipsoid.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_hybrid.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_hybrid.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_hybrid.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_hybrid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_hybrid.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_line.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_line.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_line.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_line.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_line.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_sphere.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_tri.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_tri.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_tri.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_tri.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/atom_vec_tri.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/balance.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/balance.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/balance.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/balance.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/balance.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/body.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/body.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/body.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/body.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/body.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/bond.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_deprecated.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_hybrid.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_hybrid.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_hybrid.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_hybrid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_hybrid.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_zero.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_zero.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_zero.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_zero.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/bond_zero.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/change_box.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/change_box.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/change_box.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/change_box.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/change_box.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/citeme.cpp [ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/atom_kokkos.h:16, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/accelerator_kokkos.h:22, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm.cpp:17: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp: In member function 'LAMMPS_NS::CommBrick::borders()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp:884:80: warning: 'mhi' may be used uninitialized [-Wmaybe-uninitialized] 884 | if (x[i][dim] >= mlo[icollection] && x[i][dim] <= mhi[icollection]) { | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp:779:21: note: 'mhi' was declared here 779 | double *buf,*mlo,*mhi; | ^~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_brick.cpp:774:28: warning: 'nfirst' may be used uninitialized [-Wmaybe-uninitialized] 774 | int nsend,nrecv,sendflag,nfirst,nlast,ngroup,nprior; | ^~~~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp: In member function 'LAMMPS_NS::CommTiled::borders()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp:1072:25: warning: 'nlast' may be used uninitialized [-Wmaybe-uninitialized] 1072 | for (i = 0; i < nlast; i++) { | ~~^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/comm_tiled.cpp:1030:13: note: 'nlast' was declared here 1030 | int i,m,n,nlast,nsend,nrecv,ngroup,nprior,ncount,ncountall; | ^~~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_aggregate_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_aggregate_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_aggregate_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_aggregate_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_aggregate_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp: In member function 'LAMMPS_NS::ComputeAngleLocal::compute_angles(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:298:25: warning: 'theta' may be used uninitialized [-Wmaybe-uninitialized] 298 | ptr[n] = 180.0*theta/MY_PI; | ~~~~~^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:200:28: note: 'theta' was declared here 200 | double rsq1,rsq2,r1,r2,c,theta; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:306:15: warning: 'ivar' may be used uninitialized [-Wmaybe-uninitialized] 306 | ivar++; | ~~~~^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:197:49: note: 'ivar' was declared here 197 | int i,m,na,atom1,atom2,atom3,imol,iatom,atype,ivar; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:242:35: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 242 | if (tag[atom2] != onemols[imol]->angle_atom2[atom2][i]) continue; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angle_local.cpp:197:32: note: 'imol' was declared here 197 | int i,m,na,atom1,atom2,atom3,imol,iatom,atype,ivar; | ^~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angmom_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angmom_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angmom_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angmom_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_angmom_chunk.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp: In member function 'LAMMPS_NS::ComputeBondLocal::compute_bonds(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:439:17: warning: 'ivar' may be used uninitialized [-Wmaybe-uninitialized] 439 | ivar++; | ~~~~^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:227:43: note: 'ivar' was declared here 227 | int i,m,nb,atom1,atom2,imol,iatom,btype,ivar; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:285:42: warning: 'iatom' may be used uninitialized [-Wmaybe-uninitialized] 285 | btype = onemols[imol]->bond_type[iatom][i]; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:227:31: note: 'iatom' was declared here 227 | int i,m,nb,atom1,atom2,imol,iatom,btype,ivar; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:285:25: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 285 | btype = onemols[imol]->bond_type[iatom][i]; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_bond_local.cpp:227:26: note: 'imol' was declared here 227 | int i,m,nb,atom1,atom2,imol,iatom,btype,ivar; | ^~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centro_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centro_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centro_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centro_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centro_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centroid_stress_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centroid_stress_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centroid_stress_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centroid_stress_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_centroid_stress_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp: In member function 'LAMMPS_NS::ComputeChunkAtom::atom2bin1d()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1528:51: warning: 'prd' may be used uninitialized [-Wmaybe-uninitialized] 1528 | if (xremap < boxlo[idim]) xremap += prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1495:27: note: 'prd' was declared here 1495 | double *boxlo, *boxhi, *prd; | ^~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1529:31: warning: 'boxhi' may be used uninitialized [-Wmaybe-uninitialized] 1529 | if (xremap >= boxhi[idim]) xremap -= prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1495:19: note: 'boxhi' was declared here 1495 | double *boxlo, *boxhi, *prd; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1528:30: warning: 'boxlo' may be used uninitialized [-Wmaybe-uninitialized] 1528 | if (xremap < boxlo[idim]) xremap += prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1495:11: note: 'boxlo' was declared here 1495 | double *boxlo, *boxhi, *prd; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp: In member function 'LAMMPS_NS::ComputeChunkAtom::atom2bin2d()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1604:51: warning: 'prd' may be used uninitialized [-Wmaybe-uninitialized] 1604 | if (xremap < boxlo[idim]) xremap += prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1569:27: note: 'prd' was declared here 1569 | double *boxlo, *boxhi, *prd; | ^~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1605:31: warning: 'boxhi' may be used uninitialized [-Wmaybe-uninitialized] 1605 | if (xremap >= boxhi[idim]) xremap -= prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1569:19: note: 'boxhi' was declared here 1569 | double *boxlo, *boxhi, *prd; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1604:30: warning: 'boxlo' may be used uninitialized [-Wmaybe-uninitialized] 1604 | if (xremap < boxlo[idim]) xremap += prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1569:11: note: 'boxlo' was declared here 1569 | double *boxlo, *boxhi, *prd; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp: In member function 'LAMMPS_NS::ComputeChunkAtom::atom2bin3d()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1774:52: warning: 'prd' may be used uninitialized [-Wmaybe-uninitialized] 1774 | if (zremap >= boxhi[kdim]) zremap -= prd[kdim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1676:27: note: 'prd' was declared here 1676 | double *boxlo, *boxhi, *prd; | ^~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1714:31: warning: 'boxhi' may be used uninitialized [-Wmaybe-uninitialized] 1714 | if (xremap >= boxhi[idim]) xremap -= prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1676:19: note: 'boxhi' was declared here 1676 | double *boxlo, *boxhi, *prd; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1713:30: warning: 'boxlo' may be used uninitialized [-Wmaybe-uninitialized] 1713 | if (xremap < boxlo[idim]) xremap += prd[idim]; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_atom.cpp:1676:11: note: 'boxlo' was declared here 1676 | double *boxlo, *boxhi, *prd; | ^~~~~ [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_spread_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_spread_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_spread_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_spread_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_chunk_spread_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cluster_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cluster_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cluster_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cluster_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cluster_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cna_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cna_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cna_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cna_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_cna_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_com_chunk.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_coord_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_coord_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_coord_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_coord_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_coord_atom.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_deprecated.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral.cpp [ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp: In member function 'LAMMPS_NS::ComputeDihedralLocal::compute_dihedrals(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp:316:15: warning: 'ivar' may be used uninitialized [-Wmaybe-uninitialized] 316 | ivar++; | ~~~~^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp:195:49: note: 'ivar' was declared here 195 | int i,m,nd,atom1,atom2,atom3,atom4,imol,iatom,ivar; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp:239:35: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 239 | if (tag[atom2] != onemols[imol]->dihedral_atom2[atom2][i]) continue; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dihedral_local.cpp:195:38: note: 'imol' was declared here 195 | int i,m,nd,atom1,atom2,atom3,atom4,imol,iatom,ivar; | ^~~~ [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_dipole_chunk.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_displace_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_displace_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_displace_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_displace_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_displace_atom.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_erotate_sphere_atom.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_fragment_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_fragment_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_fragment_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_fragment_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_fragment_atom.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp: In member function 'LAMMPS_NS::ComputeGlobalAtom::compute_peratom()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp:454:24: warning: 'vmax' may be used uninitialized [-Wmaybe-uninitialized] 454 | if (j >= 0 && j < vmax) vector_atom[i] = source[j]; | ~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp:401:11: note: 'vmax' was declared here 401 | int vmax; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp:385:24: warning: 'vmax' may be used uninitialized [-Wmaybe-uninitialized] 385 | if (j >= 0 && j < vmax) vector_atom[i] = source[j]; | ~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_global_atom.cpp:345:11: note: 'vmax' was declared here 345 | int vmax; | ^~~~ [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_group_group.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_group_group.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_group_group.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_group_group.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_group_group.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_gyration_chunk.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_heat_flux.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_heat_flux.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_heat_flux.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_heat_flux.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_heat_flux.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp: In member function 'LAMMPS_NS::ComputeImproperLocal::compute_impropers(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp:162:35: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 162 | if (tag[atom2] != onemols[imol]->improper_atom2[atom2][i]) continue; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp:111:40: note: 'imol' was declared here 111 | int i,m,n,ni,atom1,atom2,atom3,atom4,imol,iatom; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp:218:17: warning: 'cbuf' may be used uninitialized [-Wmaybe-uninitialized] 218 | cbuf[n] = 180.0*acos(c)/MY_PI; | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_improper_local.cpp:116:11: note: 'cbuf' was declared here 116 | double *cbuf; | ^~~~ [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_inertia_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_inertia_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_inertia_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_inertia_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_inertia_chunk.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_ke_atom.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_msd_chunk.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_omega_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_omega_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_omega_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_omega_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_omega_chunk.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_orientorder_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_orientorder_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_orientorder_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_orientorder_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_orientorder_atom.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair.cpp [ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pair_local.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pe_atom.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp: In member function 'LAMMPS_NS::ComputePressure::compute_vector()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_pressure.cpp:283:11: warning: 'ke_tensor' may be used uninitialized [-Wmaybe-uninitialized] 283 | double *ke_tensor; | ^~~~~~~~~ [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_atom.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_chunk.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_property_local.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_rdf.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_rdf.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_rdf.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_rdf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_rdf.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_chunk.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_region.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_region.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_region.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_region.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_reduce_region.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_slice.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_slice.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_slice.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_slice.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_slice.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_stress_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_stress_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_stress_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_stress_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_stress_atom.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_chunk.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_com.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_com.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_com.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_com.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_com.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_deform.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_deform.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_deform.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_deform.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_deform.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_partial.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_partial.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_partial.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_partial.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_partial.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_profile.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_profile.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_profile.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_profile.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_profile.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_ramp.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_ramp.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_ramp.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_ramp.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_ramp.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_region.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_region.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_region.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_region.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_region.cpp [ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_temp_sphere.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_torque_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_torque_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_torque_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_torque_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_torque_chunk.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vacf.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vacf.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vacf.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vacf.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vacf.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vcm_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vcm_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vcm_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vcm_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/compute_vcm_chunk.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp: In member function 'LAMMPS_NS::CreateAtoms::add_random()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:789:32: warning: 'boxhi' may be used uninitialized [-Wmaybe-uninitialized] 789 | coord[1] >= boxhi[1] || coord[2] < boxlo[2] || coord[2] >= boxhi[2]) | ~~~~~~~^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:710:19: note: 'boxhi' was declared here 710 | double *boxlo, *boxhi; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:788:31: warning: 'boxlo' may be used uninitialized [-Wmaybe-uninitialized] 788 | if (coord[0] < boxlo[0] || coord[0] >= boxhi[0] || coord[1] < boxlo[1] || | ~~~~~~~^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:710:11: note: 'boxlo' was declared here 710 | double *boxlo, *boxhi; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:812:11: warning: 'odistsq' may be used uninitialized [-Wmaybe-uninitialized] 812 | if (distsq < odistsq) { | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:708:36: note: 'odistsq' was declared here 708 | double delx, dely, delz, distsq, odistsq; | ^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp: In member function 'LAMMPS_NS::CreateAtoms::command(int, char**)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:318:75: warning: 'subsetseed' may be used uninitialized [-Wmaybe-uninitialized] 318 | if (subsetflag != NONE) ranlatt = new RanMars(lmp, subsetseed + comm->me); | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:149:7: note: 'subsetseed' was declared here 149 | int subsetseed; | ^~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:308:49: warning: 'molseed' may be used uninitialized [-Wmaybe-uninitialized] 308 | ranmol = new RanMars(lmp, molseed + comm->me); | ^ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:142:7: note: 'molseed' was declared here 142 | int molseed; | ^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:459:13: warning: 'meshfile' may be used uninitialized [-Wmaybe-uninitialized] 459 | add_mesh(meshfile); | ~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_atoms.cpp:92:15: note: 'meshfile' was declared here 92 | const char *meshfile; | ^~~~~~~~ [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_bonds.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_bonds.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_bonds.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_bonds.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_bonds.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_box.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_box.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_box.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/create_box.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/create_box.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_atoms.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_atoms.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_atoms.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_atoms.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_atoms.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_bonds.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_bonds.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_bonds.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_bonds.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/delete_bonds.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/deprecated.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_deprecated.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_hybrid.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_hybrid.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_hybrid.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_hybrid.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_hybrid.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_zero.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_zero.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_zero.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_zero.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dihedral_zero.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/displace_atoms.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/displace_atoms.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/displace_atoms.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/displace_atoms.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/displace_atoms.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_base.h:18, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/region_block_kokkos.h:27, from /builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles/style_region.h:2, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:20: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp: In member function 'LAMMPS_NS::Domain::image_check()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:791:38: warning: 'iatom' may be used uninitialized [-Wmaybe-uninitialized] 791 | if (onemols[imol]->bond_type[iatom][j] < 0) continue; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:730:20: note: 'iatom' was declared here 730 | int i,j,k,n,imol,iatom; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:791:21: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 791 | if (onemols[imol]->bond_type[iatom][j] < 0) continue; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:730:15: note: 'imol' was declared here 730 | int i,j,k,n,imol,iatom; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp: In member function 'LAMMPS_NS::Domain::box_too_small_check()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:890:38: warning: 'iatom' may be used uninitialized [-Wmaybe-uninitialized] 890 | if (onemols[imol]->bond_type[iatom][j] < 0) continue; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:840:20: note: 'iatom' was declared here 840 | int i,j,k,n,imol,iatom; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:890:21: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 890 | if (onemols[imol]->bond_type[iatom][j] < 0) continue; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/domain.cpp:840:15: note: 'imol' was declared here 840 | int i,j,k,n,imol,iatom; | ^~~~ [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp: In member function 'LAMMPS_NS::Dump::write()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:511:13: warning: 'vhold' may be used uninitialized [-Wmaybe-uninitialized] 511 | atom->v = vhold; | ~~~~~~~~^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:326:20: note: 'vhold' was declared here 326 | double **xhold,**vhold; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:510:13: warning: 'xhold' may be used uninitialized [-Wmaybe-uninitialized] 510 | atom->x = xhold; | ~~~~~~~~^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:326:12: note: 'xhold' was declared here 326 | double **xhold,**vhold; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:512:17: warning: 'imagehold' may be used uninitialized [-Wmaybe-uninitialized] 512 | atom->image = imagehold; | ~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump.cpp:325:13: note: 'imagehold' was declared here 325 | imageint *imagehold; | ^~~~~~~~~ [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_atom.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_cfg.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_cfg.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_cfg.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_cfg.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_cfg.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_custom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_custom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_custom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_custom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_custom.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_deprecated.cpp [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp: In member function 'LAMMPS_NS::DumpImage::create_image()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:976:33: warning: 'color2' may be used uninitialized [-Wmaybe-uninitialized] 976 | image->draw_cylinder(xmid,x[atom2],color2,diameter,3); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:688:26: note: 'color2' was declared here 688 | double *color,*color1,*color2; | ^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:970:33: warning: 'color1' may be used uninitialized [-Wmaybe-uninitialized] 970 | image->draw_cylinder(x[atom1],xmid,color1,diameter,3); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:688:18: note: 'color1' was declared here 688 | double *color,*color1,*color2; | ^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:911:54: warning: 'iatom' may be used uninitialized [-Wmaybe-uninitialized] 911 | btype = atom->map(onemols[imol]->bond_type[iatom][m]); | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:683:40: note: 'iatom' was declared here 683 | int i,j,k,m,n,itype,atom1,atom2,imol,iatom,btype,ibonus,drawflag; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:911:37: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 911 | btype = atom->map(onemols[imol]->bond_type[iatom][m]); | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:683:35: note: 'imol' was declared here 683 | int i,j,k,m,n,itype,atom1,atom2,imol,iatom,btype,ibonus,drawflag; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:811:29: warning: 'color' may be used uninitialized [-Wmaybe-uninitialized] 811 | image->draw_cylinder(pt3,pt1,color,tdiamvalue,3); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:688:11: note: 'color' was declared here 688 | double *color,*color1,*color2; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:976:33: warning: 'diameter' may be used uninitialized [-Wmaybe-uninitialized] 976 | image->draw_cylinder(xmid,x[atom2],color2,diameter,3); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_image.cpp:685:10: note: 'diameter' was declared here 685 | double diameter,delx,dely,delz; | ^~~~~~~~ [ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_local.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_movie.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_movie.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_movie.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_movie.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_movie.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_xyz.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_xyz.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_xyz.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_xyz.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/dump_xyz.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/atom_kokkos.h:16, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/accelerator_kokkos.h:22, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/error.cpp:17: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/atom_kokkos.h:16, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/accelerator_kokkos.h:22, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/finish.cpp:17: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp: In member function 'LAMMPS_NS::FixAdapt::change_settings()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:656:33: warning: 'scale' may be used uninitialized [-Wmaybe-uninitialized] 656 | if (scaleflag) q[i] *= scale; | ~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:646:16: note: 'scale' was declared here 646 | double scale; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:635:38: warning: 'scale' may be used uninitialized [-Wmaybe-uninitialized] 635 | if (scaleflag) radius[i] *= scale; | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:619:16: note: 'scale' was declared here 619 | double scale; | ^~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp: In member function 'LAMMPS_NS::FixAdapt::restore_settings()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:734:43: warning: 'scale' may be used uninitialized [-Wmaybe-uninitialized] 734 | else rmass[i] *= scale*scale*scale; | ~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_adapt.cpp:719:16: note: 'scale' was declared here 719 | double scale; | ^~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_addforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_addforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_addforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_addforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_addforce.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_atom.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_chunk.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp: In member function 'LAMMPS_NS::FixAveCorrelate::end_of_step()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp:453:26: warning: 'scalar' may be used uninitialized [-Wmaybe-uninitialized] 453 | values[lastindex][i] = scalar; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_correlate.cpp:391:10: note: 'scalar' was declared here 391 | double scalar; | ^~~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo_weight.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo_weight.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo_weight.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo_weight.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_histo_weight.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp: In member function 'LAMMPS_NS::FixAveTime::column_length(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:981:14: warning: 'lengthone' may be used uninitialized [-Wmaybe-uninitialized] 981 | else if (lengthone != length) | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:935:16: note: 'lengthone' was declared here 935 | int m,length,lengthone; | ^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp: In member function 'LAMMPS_NS::FixAveTime::invoke_scalar(long)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:616:20: warning: 'scalar' may be used uninitialized [-Wmaybe-uninitialized] 616 | else vector[i] += scalar; | ~~~~~~~~~~^~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:546:10: note: 'scalar' was declared here 546 | double scalar; | ^~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp: In member function 'LAMMPS_NS::FixAveTime::FixAveTime(LAMMPS_NS::LAMMPS*, int, char**)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:402:30: warning: 'value' may be used uninitialized [-Wmaybe-uninitialized] 402 | if (i == 0) extarray = value; | ~~~~~~~~~^~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_ave_time.cpp:386:11: note: 'value' was declared here 386 | int value; | ^~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_aveforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_aveforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_aveforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_aveforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_aveforce.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp: In member function 'LAMMPS_NS::FixBalance::rebalance()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp:302:53: warning: 'sendproc' may be used uninitialized [-Wmaybe-uninitialized] 302 | if (lbstyle == BISECTION) irregular->migrate_atoms(0,1,sendproc); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_balance.cpp:271:8: note: 'sendproc' was declared here 271 | int *sendproc; | ^~~~~~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_bond_history.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_bond_history.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_bond_history.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_bond_history.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_bond_history.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_box_relax.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_box_relax.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_box_relax.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_box_relax.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_box_relax.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deform.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deform.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deform.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deform.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deform.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp: In member function 'LAMMPS_NS::FixDeposit::pre_exchange()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp:599:31: warning: 'imol' may be used uninitialized [-Wmaybe-uninitialized] 599 | atom->nbonds += onemols[imol]->nbonds; | ^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deposit.cpp:303:24: note: 'imol' was declared here 303 | int i,m,n,nlocalprev,imol,natom,flag,flagall; | ^~~~ [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deprecated.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deprecated.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deprecated.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deprecated.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_deprecated.cpp [ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dt_reset.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dt_reset.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dt_reset.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dt_reset.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dt_reset.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dummy.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dummy.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dummy.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dummy.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_dummy.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_efield.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_efield.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_efield.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_efield.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_efield.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_enforce2d.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_enforce2d.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_enforce2d.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_enforce2d.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_enforce2d.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp: In member function 'LAMMPS_NS::FixEvaporate::pre_exchange()': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp:323:31: warning: 'iatom' may be used uninitialized [-Wmaybe-uninitialized] 323 | } else if (me == proc && i == iatom) { | ~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_evaporate.cpp:234:19: note: 'iatom' was declared here 234 | int me, proc, iatom, ndelone, ndelall, index; | ^~~~~ [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_external.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_external.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_external.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_external.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_external.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_gravity.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_gravity.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_gravity.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_gravity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_gravity.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_group.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_group.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_group.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_group.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_group.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_halt.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_halt.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_halt.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_halt.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_halt.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_heat.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_heat.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_heat.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_heat.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_heat.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_indent.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_indent.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_indent.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_indent.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_indent.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_langevin.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_langevin.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_langevin.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_langevin.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_langevin.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_lineforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_lineforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_lineforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_lineforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_lineforce.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_minimize.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_minimize.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_minimize.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_minimize.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_minimize.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_momentum.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_momentum.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_momentum.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_momentum.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_momentum.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp: In member function 'LAMMPS_NS::FixMove::initial_integrate(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:1048:39: warning: 'dz' may be used uninitialized [-Wmaybe-uninitialized] 1048 | x[i][2] = xoriginal[i][2] + dz; | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:508:25: note: 'dz' was declared here 508 | double ddotr, dx, dy, dz; | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:1017:39: warning: 'dy' may be used uninitialized [-Wmaybe-uninitialized] 1017 | x[i][1] = xoriginal[i][1] + dy; | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:508:21: note: 'dy' was declared here 508 | double ddotr, dx, dy, dz; | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:986:39: warning: 'dx' may be used uninitialized [-Wmaybe-uninitialized] 986 | x[i][0] = xoriginal[i][0] + dx; | ~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_move.cpp:508:17: note: 'dx' was declared here 508 | double ddotr, dx, dy, dz; | ^~ [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_neigh_history.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_neigh_history.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_neigh_history.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_neigh_history.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_neigh_history.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nh_sphere.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nph_sphere.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt.cpp [ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_npt_sphere.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_limit.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_limit.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_limit.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_limit.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_limit.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_noforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_noforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_noforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_noforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_noforce.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nve_sphere.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sllod.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sllod.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sllod.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sllod.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sllod.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sphere.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sphere.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sphere.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sphere.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_nvt_sphere.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_planeforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_planeforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_planeforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_planeforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_planeforce.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_press_berendsen.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_press_berendsen.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_press_berendsen.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_press_berendsen.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_press_berendsen.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_print.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_print.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_print.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_print.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_print.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_property_atom.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_property_atom.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_property_atom.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_property_atom.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_property_atom.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_read_restart.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_read_restart.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_read_restart.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_read_restart.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_read_restart.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_recenter.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_recenter.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_recenter.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_recenter.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_recenter.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_respa.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_respa.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_respa.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_respa.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_respa.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp: In member function 'LAMMPS_NS::FixRestrain::restrain_dihedral(int)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp:644:33: warning: 'ddf1' may be used uninitialized [-Wmaybe-uninitialized] 644 | df1 = df1*cos_target[m] - ddf1*sin_target[m]; | ~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_restrain.cpp:525:17: note: 'ddf1' was declared here 525 | double df,df1,ddf1,fg,hg,fga,hgb,gaa,gbb; | ^~~~ [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_setforce.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_setforce.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_setforce.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_setforce.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_setforce.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_chunk.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_chunk.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_chunk.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_chunk.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_chunk.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_self.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_self.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_self.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_self.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_spring_self.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store.cpp [ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_force.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_force.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_force.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_force.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_force.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_local.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_local.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_local.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_local.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_local.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_state.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_state.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_state.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_state.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_store_state.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_berendsen.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_berendsen.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_berendsen.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_berendsen.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_berendsen.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_rescale.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_rescale.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_rescale.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_rescale.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_temp_rescale.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_thermal_conductivity.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_thermal_conductivity.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_thermal_conductivity.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_thermal_conductivity.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_thermal_conductivity.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_update_special_bonds.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_update_special_bonds.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_update_special_bonds.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_update_special_bonds.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_update_special_bonds.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp: In member function 'LAMMPS_NS::FixVector::FixVector(LAMMPS_NS::LAMMPS*, int, char**)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp:124:14: warning: 'finalvalue' may be used uninitialized [-Wmaybe-uninitialized] 124 | extarray = finalvalue; | ~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp:71:13: note: 'finalvalue' was declared here 71 | int value,finalvalue; | ^~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp:114:10: warning: 'value' may be used uninitialized [-Wmaybe-uninitialized] 114 | else if (value != finalvalue) | ^~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_vector.cpp:71:7: note: 'value' was declared here 71 | int value,finalvalue; | ^~~~~ [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_viscous.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_viscous.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_viscous.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_viscous.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_viscous.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp: In member function 'LAMMPS_NS::FixWall::FixWall(LAMMPS_NS::LAMMPS*, int, char**)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall.cpp:65:11: warning: 'newwall' may be used uninitialized [-Wmaybe-uninitialized] 65 | int newwall; | ^~~~~~~ [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_harmonic.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_harmonic.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_harmonic.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_harmonic.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_harmonic.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj1043.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj1043.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj1043.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj1043.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj1043.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj126.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj126.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj126.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj126.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj126.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj93.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj93.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj93.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj93.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_lj93.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_morse.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_morse.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_morse.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_morse.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_morse.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp: In member function 'LAMMPS_NS::FixWallReflect::FixWallReflect(LAMMPS_NS::LAMMPS*, int, char**)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_reflect.cpp:58:11: warning: 'newwall' may be used uninitialized [-Wmaybe-uninitialized] 58 | int newwall; | ^~~~~~~ [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_region.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_region.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_region.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_region.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fix_wall_region.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_format.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_format.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_format.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_format.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_format.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_os.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_os.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_os.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_os.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/fmtlib_os.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp In file included from /usr/include/kokkos/Kokkos_Core_fwd.hpp:56, from /usr/include/kokkos/Kokkos_Core.hpp:55, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/kokkos_type.h:21, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS/angle_charmm_kokkos.h:27, from /builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles/style_angle.h:2, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp:16: /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ /usr/include/kokkos/Kokkos_Vectorization.hpp:53:1: note: '#pragma message: "Including non-public Kokkos header files is not allowed."' 53 | KOKKOS_IMPL_WARNING("Including non-public Kokkos header files is not allowed.") | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT/pair_mgpt.h:39, from /builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles/style_pair.h:343, from /builddir/build/BUILD/lammps-patch_23Jun2022/src/force.cpp:21: /builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT/mgpt_readpot.h: In member function 'void potdata2::readpot2(const char*, const char*, double)': /builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT/mgpt_readpot.h:221:24: warning: comparing the result of pointer addition '(parmin_suffix + -1)' and NULL [-Waddress] 221 | if(parmin_suffix-1 == nullptr) { | ~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT/mgpt_readpot.h:226:23: warning: comparing the result of pointer addition '(potin_suffix + -1)' and NULL [-Waddress] 226 | if(potin_suffix-1 == nullptr) { | ~~~~~~~~~~~~~~~^~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/gridcomm.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/gridcomm.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/gridcomm.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/gridcomm.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/gridcomm.cpp [ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/group.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/group.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/group.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/group.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/group.cpp [ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/hashlittle.cpp.o /usr/bin/g++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DKOKKOS_DEPENDENCE -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_GPU -DLMP_KOKKOS -DLMP_OPENMP -DLMP_PLUGIN -DLMP_PYTHON -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ASPHERE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ATC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BOCS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BPM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/BROWNIAN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-DNA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CG-SDK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CLASS2 -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLLOID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/COLVARS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIELECTRIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIFFRACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DIPOLE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-BASIC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-MESO -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-REACT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DPD-SMOOTH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/DRUDE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-COMPUTE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-DUMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-FIX -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/EXTRA-PAIR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/FEP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GRANULAR -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/H5MD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/INTERLAYER -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KIM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KSPACE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANIFOLD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MANYBODY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MEAM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MGPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MISC -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-IAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-RANN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ML-SNAP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOFFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/MOLECULE -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/ORIENT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PERI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PHONON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PLUGIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/POEMS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PTM -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/PYTHON -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QEQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/QTB -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REACTION -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REAXFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/REPLICA -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/RIGID -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SHOCK -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SMTBQ -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPH -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SPIN -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/SRD -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/TALLY -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/UEF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/VORONOI -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/YAFF -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/CORESHELL -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPENMP -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/KOKKOS -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/OPT -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/GPU -I/builddir/build/BUILD/lammps-patch_23Jun2022/serial/styles -I/builddir/build/BUILD/lammps-patch_23Jun2022/src/STUBS -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/poems -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/atc -I/builddir/build/BUILD/lammps-patch_23Jun2022/lib/h5md/include -isystem /usr/include/python3.11 -isystem /usr/lib64/kim-api/mod -isystem /usr/include/kim-api -isystem /usr/include/kokkos -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fopenmp -std=c++14 -MD -MT CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/hashlittle.cpp.o -MF CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/hashlittle.cpp.o.d -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-patch_23Jun2022/src/hashlittle.cpp.o -c /builddir/build/BUILD/lammps-patch_23Jun2022/src/hashlittle.cpp